Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
(211 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 30 1.6
07_01_0812 + 6381428-6381880 30 1.6
11_07_0012 + 27346844-27346949,27347152-27347756 29 2.8
09_02_0269 - 6527150-6527754,6527957-6528062 29 2.8
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 28 4.9
06_03_0261 - 18903429-18903737,18903778-18904125 28 6.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 6.4
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873... 27 8.5
04_03_0422 + 15746168-15746620 27 8.5
04_02_0028 - 8736882-8737540,8737686-8738268 27 8.5
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 44 FSDGGIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDG 84
F+DG A AE GP V D+ V+ C ++ RSG+G
Sbjct: 250 FADGISARAEKGPGRPECDVDDKSSCAVALCSKILPRSGNG 290
>07_01_0812 + 6381428-6381880
Length = 150
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 42 EPFSDGGIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGAG 90
+P GG A A+ RSVV P GV GEVD R+ + G G
Sbjct: 25 DPGGGGGEAVAKRSRRSVVVGDPGVGEVGVGEVGEVDGRTAERTTGGEG 73
>11_07_0012 + 27346844-27346949,27347152-27347756
Length = 236
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 47 GGIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGA 89
G G R+ SP P R+L S+ ++ AR G G AC A
Sbjct: 146 GATRGTMAGERNGYSPFPLRYLPLASSFTKLTARWGRGAACSA 188
>09_02_0269 - 6527150-6527754,6527957-6528062
Length = 236
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 47 GGIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGA 89
G G R+ SP P R+L S+ ++ AR G G AC A
Sbjct: 146 GATRGTMAGERNGYSPFPLRYLPLASSFTKLTARWGRGAACSA 188
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 26 RPTGAAAHETIAPFRSEPFSDGGIAAAECGPRS 58
+P+ AAA AP +DGG C PRS
Sbjct: 12 KPSPAAAAGAAAPTTPPAAADGGAGGESCSPRS 44
>06_03_0261 - 18903429-18903737,18903778-18904125
Length = 218
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 71 VSACGEVDARSGDGRACGAGE 91
V GEVD R+ GRA G GE
Sbjct: 100 VGEVGEVDGRTARGRAAGGGE 120
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 48 GIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGAGER 92
G A GP + PVPD V A G D +G G A GAG R
Sbjct: 82 GRDGAVAGPPA--DPVPDARQRRVPAGGGADPAAGVGPAIGAGAR 124
>07_01_1021 +
8736032-8736106,8736336-8736374,8737362-8737493,
8737848-8737892,8738450-8739157,8740679-8740807,
8741290-8741346,8742937-8742954
Length = 400
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 29 GAAAHETIAPFRSEPFSDGGIAAAECGPRSVVSPVPDRFLGGV-SACGE-VDARSGDGRA 86
G A A RS D G GPR ++ V R G CG ++AR G G
Sbjct: 228 GGAVGRRWAVARSGDGGDAGGEERGAGPRRLL--VEGRRGGEARGGCGAAMEARGGGGAG 285
Query: 87 CGAGER 92
CGA R
Sbjct: 286 CGASRR 291
>04_03_0422 + 15746168-15746620
Length = 150
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 42 EPFSDGGIAAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGAG 90
+P GG A A+ RS V P GV GEVD R + G G
Sbjct: 25 DPGGGGGEAVAKRSRRSAVVGDPGVGEVGVGEVGEVDGRMAERTTGGEG 73
>04_02_0028 - 8736882-8737540,8737686-8738268
Length = 413
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 169 PEAALQTLIDPPISLKTL-IARYEYCQFYDRFYDRMMFLL 207
P L TLI +L TL IAR+ +C + +R +D F+L
Sbjct: 134 PMRDLATLISAAPNLATLHIARHNFCWYPERDFDDGRFVL 173
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,803,942
Number of Sequences: 37544
Number of extensions: 233910
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 11
length of query: 211
length of database: 14,793,348
effective HSP length: 79
effective length of query: 132
effective length of database: 11,827,372
effective search space: 1561213104
effective search space used: 1561213104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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