GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
         (211 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    27   7.5  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    27   7.5  

>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 50  AAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGAG 90
           AA   GPR V  P   + L G++   E+  +   G A G G
Sbjct: 232 AAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPG 272


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 50  AAAECGPRSVVSPVPDRFLGGVSACGEVDARSGDGRACGAG 90
           AA   GPR V  P   + L G++   E+  +   G A G G
Sbjct: 232 AAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPG 272


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,273,904
Number of Sequences: 27539
Number of extensions: 143718
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 2
length of query: 211
length of database: 12,573,161
effective HSP length: 78
effective length of query: 133
effective length of database: 10,425,119
effective search space: 1386540827
effective search space used: 1386540827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)