GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000824-TA|BGIBMGA000824-PA|undefined
         (211 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67890.1 68414.m07752 protein kinase family protein contains ...    28   5.4  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    28   5.4  

>At1g67890.1 68414.m07752 protein kinase family protein contains
          Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 26 RPTGAAAHETIAPFRSEPFSDGGIAAAECGP 56
          R TGAA+    +P R E  S  G+A    GP
Sbjct: 63 RKTGAASFRHASPLRKESHSKDGVAGGGDGP 93


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 156 RRSRNLTRWSTLEPEAALQTLIDPPISLKTLIARYEYCQFYD 197
           R S    RW T  PE +  T++ P  S++ L   +E  +F D
Sbjct: 924 RMSCRKCRWITNYPEKSSYTIVMPADSIRQLKCAFESMKFVD 965


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,106,667
Number of Sequences: 28952
Number of extensions: 135369
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 2
length of query: 211
length of database: 12,070,560
effective HSP length: 78
effective length of query: 133
effective length of database: 9,812,304
effective search space: 1305036432
effective search space used: 1305036432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)