Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000823-TA|BGIBMGA000823-PA|IPR008949|Terpenoid synthase
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    65   2e-11
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    49   1e-06
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    31   0.29 
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.68 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   3.6  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    27   3.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   6.3  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    27   6.3  

>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 87/379 (22%), Positives = 164/379 (43%), Gaps = 54/379 (14%)

Query: 41  IVGYPTSFLNLRWLFNDEIANTAIHLRKLVGTNHPLLKSAKNLLIGSKSNLQSVGLIILL 100
           ++ + T+  N   L  +E+   +  +R+++ +N   L+        ++       L+ LL
Sbjct: 23  VLRFSTTNRNASHLIKNELEQISPGIRQMLNSNSEFLEECSKYYTIAQGKQMRPSLV-LL 81

Query: 101 VSKAA----GFDAN-----YYNRDH---YDSG-VLHAQRALAEIVEMKRTGHMIHKAMVN 147
           +SKA     G D +     Y + D    + +G +L +Q  LA+I EM     ++H  +++
Sbjct: 82  MSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHDDVID 141

Query: 148 LQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGDF 207
             +  +      ++ +GN+  +L G+F+LA+    +  LRN  VTEL++T + DLV G+F
Sbjct: 142 HANVRRGSPS-SNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLVRGEF 200

Query: 208 FGEHDDNNNPIPTQPKATNKFETHYKWETEDNLEKLGSNDFLGHGKDEWTLRTMLTSGSL 267
             +  +  +P   + K +N F+ +        +EK                 + L + SL
Sbjct: 201 L-QLKNTMDPSSLEIKQSN-FDYY--------IEK-----------------SFLKTASL 233

Query: 268 LGKGCQAATKLAHLGEDAERNAYILGGHLAIMWQLYLDVKDFFTH----------PYSYS 317
           + K C+A+T L          A   G  +   +QL  DV D+ +                
Sbjct: 234 ISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLG 293

Query: 318 LVGAPVIFAIWEYPTIYGHILESKLERKPVEYKQLYYAVRSTRSLEYLCVFFEEELASVL 377
           L  APV+FA  +YP + G ++ ++    P + ++    V  T ++E    + +E +    
Sbjct: 294 LATAPVLFAWKKYPEL-GAMIVNRFNH-PSDIQRARSLVECTDAIEQTITWAKEYIKKAK 351

Query: 378 KCSERFPVDDARVALQKMA 396
                 P   AR AL  +A
Sbjct: 352 DSLLCLPDSPARKALFALA 370


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 17/112 (15%)

Query: 96  LIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAEIVEMKRTGHMIHKAMVNLQDKEKHK 155
           L++LL+S+A+       N D     +    + LA + E+    ++IH   +N+ + E+  
Sbjct: 91  LLVLLMSRAS------VNGDPPSQQLFQRYKQLARVTELIHAANIIH---INIGE-EQSN 140

Query: 156 EKVKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGDF 207
           E++K       +  L GD+LL K    L  L NNA+TE++++ + +LVEG F
Sbjct: 141 EQIK-------LATLVGDYLLGKASVDLAHLENNAITEIMASVIANLVEGHF 185


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 161 LLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVE-GDFFGE 210
           ++Y NK+V+   D ++ KC + L G +   ++  + T L + ++ G +FGE
Sbjct: 231 VMYSNKLVVPPSDSIIKKCEETLQGCK--LISRAVKTALAETIDMGLWFGE 279


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 229 ETHYKWETEDNLEKLGSNDFLGHGKDEW 256
           +T   WE+ + +EKLGS   +G+  +EW
Sbjct: 152 DTGILWESCEKIEKLGSEGIVGYMLEEW 179


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 75  PLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAEIVEM 134
           P LK+AK  L+     +++  L I    KA  FDAN YN + +      + + L+E  E 
Sbjct: 4   PALKAAKEALV-----VKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEA 58

Query: 135 KRTGHMI-HKAMVNLQDKEKHKEKVKDLLYGNKIV-LLTGDFL 175
                 I  KA++  Q      E   D+   +KI  +L   FL
Sbjct: 59  YLDAIKIDEKAVLAWQGLWNLYESTHDISELHKITPILASKFL 101


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 138 GHM--IHKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELI 195
           GH+  +H  + N  +  + + ++  LL  +K +    D  +  C++++  + +  + + +
Sbjct: 39  GHLKTLHSLISNYTNGRELQNEISSLLKQDKEL----DLQIQDCMREMTSIYDTHLPKTV 94

Query: 196 STGLRDLVEGDFFGEHDDNNNPIPTQPKATN-------KFETHYKWETEDNLEK 242
           S   R  V  +   ++    +   + P   N       K   HY W +ED + K
Sbjct: 95  SGRKRQKVNAETLLDYGRKLSKFSSAPPGYNPETGQDAKAPVHYPWPSEDQMRK 148


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 139  HMIHKAMVNLQDKEKHKEKVKDLLYGN 165
            +M  KA+V L+D EK  E   D  +GN
Sbjct: 1876 YMSQKAIVFLRDLEKRTESANDDFFGN 1902


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 52  RWLFNDEIANTAIHLRKLVGTNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANY 111
           ++L   EI        K   + HP +K A   L   KS L+S+     L    AGFD +Y
Sbjct: 44  KYLLAGEIYGRVCFWLKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEETDAGFD-SY 102

Query: 112 YNR 114
           +N+
Sbjct: 103 WNK 105


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,612
Number of Sequences: 5004
Number of extensions: 87717
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 9
length of query: 409
length of database: 2,362,478
effective HSP length: 74
effective length of query: 335
effective length of database: 1,992,182
effective search space: 667380970
effective search space used: 667380970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)