Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000823-TA|BGIBMGA000823-PA|IPR008949|Terpenoid synthase
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   5e-34
SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   2e-06
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  

>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score =  142 bits (344), Expect = 5e-34
 Identities = 76/184 (41%), Positives = 121/184 (65%), Gaps = 7/184 (3%)

Query: 25  QRDDAGWRDVVSEAEQIVGYPTSFLNLRWLFNDEIANTAIHLRKLVGTNHPLLKSAKNLL 84
           Q+DD      +S+AE++VGYPTSFL+LR L +DE++N A+++++LVG+ HPL+K+A+  +
Sbjct: 51  QQDDL--TKALSDAEKLVGYPTSFLSLRCLLSDELSNIAMYMKRLVGSRHPLVKTARGFV 108

Query: 85  IGSKSNLQSVGLIILLVSKAAG--FDANYYNRDHYD-SGVLHAQRALAEIVEMKRTGHMI 141
              + ++Q+ GL++LLV+KAA     +N  + +H   SG+   QR +AEI EM  T ++I
Sbjct: 109 YDGQYSMQTRGLLVLLVAKAAAPCLPSNKVSMEHEAVSGIFPGQRQIAEITEMIHTAYLI 168

Query: 142 HKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRD 201
           H  +V+L       ++ KD+ +GNK+ +LTGDFLLA     L  L +  V  +IST +  
Sbjct: 169 HNGVVDL--AAVPTKEFKDMEFGNKMSVLTGDFLLANACTGLAALNDTQVVAMISTVISH 226

Query: 202 LVEG 205
           L+EG
Sbjct: 227 LMEG 230



 Score = 35.5 bits (78), Expect = 0.079
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 254 DEWTLRTMLTSGSLLGKGCQAATKLAHLGEDAERNAYILGGHLAIMWQLYLDVKDFFTHP 313
           D W      +  SLL   CQAA KL     + +  AY  G ++A    L  ++++  ++ 
Sbjct: 243 DYWKEIVFKSKASLLANSCQAALKLLSHSTELQEKAYEFGKNIAFAQHLKDELENLQSNQ 302

Query: 314 YSYSLVGAPVIFAIWE 329
            + +L  A VI ++ E
Sbjct: 303 PAMTLNSASVILSLAE 318


>SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 121 VLHAQRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCL 180
           +LH Q   A I EM  T  +IH  +++  D  + K  + +L+YG+K  +L GD++L++  
Sbjct: 81  ILHDQETAAMISEMIHTASLIHDDVIDRADTRRGKVAI-NLMYGDKNCILAGDYILSRVS 139

Query: 181 QQLGGLRNNAVTELISTGLRDLVEGDF 207
             +    N    +L++  + +LV G+F
Sbjct: 140 LAIARFGNVEAVKLLAEIVDELVRGEF 166


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 160  DLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGDFFGEHDD-NNNPI 218
            +L +GN ++  +     A     L G+    + +LI+    D   G FF +  D +NNP+
Sbjct: 1469 NLRHGNSLIRYSNKDQAASARNNLNGMMVKGM-QLIADFATDSDIGGFFEQTPDWSNNPM 1527

Query: 219  PTQPKATNKFETHYKWETEDNLEKLGSNDFL 249
            P  P     F   + + T D    LGS   L
Sbjct: 1528 PPNP----SFGNPWSFGTVDPNRPLGSTQGL 1554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,233
Number of Sequences: 59808
Number of extensions: 593539
Number of successful extensions: 1177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 4
length of query: 409
length of database: 16,821,457
effective HSP length: 84
effective length of query: 325
effective length of database: 11,797,585
effective search space: 3834215125
effective search space used: 3834215125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)