GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000823-TA|BGIBMGA000823-PA|IPR008949|Terpenoid synthase
         (409 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    46   5e-05
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    31   1.5  
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z81470-4|CAB03879.1|  550|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical pr...    29   7.9  
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    29   7.9  

>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 121 VLHAQRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCL 180
           V   Q  +  I EM  T  ++H  +++  +  +    V + ++GNK+ +L GDF+LA+  
Sbjct: 131 VCQNQYKIGMIAEMIHTASLVHDDVIDEANTRRGSASV-NAVWGNKMSVLVGDFILARAT 189

Query: 181 QQLGGLRNNAVTELISTGLRDLVEGDFFGEHDDNNNPIPTQPKATNKFETHYK 233
           Q L  +    +  ++++ + DLV G+F        +  P         +TH K
Sbjct: 190 QILCSIGKPNIISVMASIIEDLVLGEFMQMSTTPTDATPVDRMKAYIEKTHRK 242


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 170 LTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGDFFGEHDDNNNPI 218
           + G+       + L GL  +A+TEL     RD++E  FF E    N P+
Sbjct: 101 IPGENFTRIAFKDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPV 149


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 170 LTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGDFFGEHDDNNNPI 218
           + G+       + L GL  +A+TEL     RD++E  FF E    N P+
Sbjct: 101 IPGENFTRIAFKDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPV 149


>Z81470-4|CAB03879.1|  550|Caenorhabditis elegans Hypothetical
           protein C14A6.5 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 113 NRDHYDSGVLHAQRALA-EIVEMKRTGHMIHKAMVNLQ--DKEKHKEKVKD-LLYGNKI 167
           +RD  D+ +  ++R  A E++E++      HKA++NL+  D E  + +VKD ++Y  KI
Sbjct: 385 SRDSIDAEIGSSKRLCAPELLELREYFQNAHKAILNLRNSDFEGLEPEVKDTIMYFRKI 443


>Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical
           protein T20D3.2 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 338 LESKLERKPVEYKQLYYAVRSTRSLEYLCVFFEEELASVLKCSERFPVDDA 388
           L + L +   ++   +  VR+ R LE++CV    E+ S   C   FP  +A
Sbjct: 116 LYTLLNKPQPDFSNTFDYVRTFRGLEWMCVGGFSEVVSQWDCLGTFPTTNA 166


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 316 YSLVGAPVIFAIWEYPTIYGHILESKLERKPVEYKQLYYAVRSTRSLEYLCVFF 369
           YSL+GA + F IW+Y  +    +E K+++K    K+L     +T    +L +FF
Sbjct: 347 YSLIGAAICFIIWKY--MGATNIEMKVDKKK---KKLRMDCHNTTIGLFLGIFF 395


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,494,571
Number of Sequences: 27539
Number of extensions: 462266
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 6
length of query: 409
length of database: 12,573,161
effective HSP length: 83
effective length of query: 326
effective length of database: 10,287,424
effective search space: 3353700224
effective search space used: 3353700224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)