GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000823-TA|BGIBMGA000823-PA|IPR008949|Terpenoid synthase
         (409 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    24   2.0  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    24   2.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   2.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   6.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   6.2  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 71  GTNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAE 130
           G  + ++   KN L     N ++      +  K A FD  YY R       +  +++L E
Sbjct: 66  GKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPMGFQGMRGKKSLEE 125

Query: 131 IVE 133
           I++
Sbjct: 126 ILD 128


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 71  GTNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAE 130
           G  + ++   KN L     N ++      +  K A FD  YY R       +  +++L E
Sbjct: 66  GKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPMGFQGMRGKKSLEE 125

Query: 131 IVE 133
           I++
Sbjct: 126 ILD 128


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 71  GTNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAE 130
           G  + ++   KN L     N ++      +  K A FD  YY R       +  +++L E
Sbjct: 66  GKKNSIINDVKNELFPEDINKRAPMGFQGMRGKKASFDDEYYKRAPMGFQGMRGKKSLEE 125

Query: 131 IVE 133
           I++
Sbjct: 126 ILD 128


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 97  IILLVSKAAGFDANYYNRDHY 117
           II  +S +  +  NYYN ++Y
Sbjct: 303 IISSLSNSCNYSNNYYNNNNY 323


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 221 QPKATNKFETHYKWETEDNLEKLGSNDFLGHGK 253
           +PK  +    +YK+   +N     +N++  + K
Sbjct: 311 EPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNK 343


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,041
Number of Sequences: 429
Number of extensions: 5136
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 409
length of database: 140,377
effective HSP length: 59
effective length of query: 350
effective length of database: 115,066
effective search space: 40273100
effective search space used: 40273100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)