GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000823-TA|BGIBMGA000823-PA|IPR008949|Terpenoid synthase
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id...    71   2e-12
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ...    65   9e-11
At2g34630.1 68415.m04254 geranyl diphosphate synthase, putative ...    53   3e-07
At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    31   1.1  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    30   2.4  
At5g08280.1 68418.m00975 hydroxymethylbilane synthase / porphobi...    29   4.2  
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono...    29   7.4  
At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase, ...    28   9.8  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    28   9.8  
At2g03630.1 68415.m00323 hypothetical protein                          28   9.8  
At1g74390.1 68414.m08618 exonuclease family protein contains exo...    28   9.8  
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa...    28   9.8  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    28   9.8  

>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
           identical to solanesyl diphosphate synthase [Arabidopsis
           thaliana] GI:19911233; contains Pfam profile PF00348:
           Polyprenyl synthetase
          Length = 406

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 22  GLGQRDDAGWRDVVSEAEQIVGYPTSFLNLRWLFNDEIANTAIHLRKLVGTNHPLLKSAK 81
           G+GQ     + D+  E++Q    P S + L  L   ++     +L  +VG  +P+L SA 
Sbjct: 63  GIGQSQTVSF-DLKQESKQ----PISLVTLFELVAVDLQTLNDNLLSIVGAENPVLISAA 117

Query: 82  NLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAEIVEMKRTGHMI 141
             + G+       GL+ L VS A    A           +    R LAEI+EM  T  +I
Sbjct: 118 EQIFGAGGKRMRPGLVFL-VSHATAELAGLKE-------LTTEHRRLAEIIEMIHTASLI 169

Query: 142 HKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRD 201
           H  +++  D  + KE V +L +G ++ +L GDF+ A+    L  L N  V +LIS  ++D
Sbjct: 170 HDDVLDESDMRRGKETVHEL-FGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQVIKD 228

Query: 202 LVEGD 206
              G+
Sbjct: 229 FASGE 233


>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
           GPPS, putative / dimethylallyltransferase, putative /
           prenyl transferase, putative similar to GI:11322965;
           Except for first 55 amino acids, 52% identical to Prenyl
           transferase (Cyanophora paradoxa) (gi 99282). Location
           of est 120E9T7 (gb|T43950)
          Length = 417

 Score = 64.9 bits (151), Expect = 9e-11
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 45  PTSFLNLRWLFNDEIANTAIHLRKLVGTNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKA 104
           P S   L  +  D++     +L  +VG  +P+L SA   +  +       GL+ L VS+A
Sbjct: 92  PISLETLFEVVADDLQRLNDNLLSIVGAENPVLISAAEQIFSAGGKRMRPGLVFL-VSRA 150

Query: 105 AGFDANYYNRDHYDSGVLHAQRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKVKDLLYG 164
               A        +  V H  R L EI+EM  T  +IH  +++  D  + +E V +L +G
Sbjct: 151 TAELAGLK-----ELTVEH--RRLGEIIEMIHTASLIHDDVLDESDMRRGRETVHEL-FG 202

Query: 165 NKIVLLTGDFLLAKCLQQLGGLRNNAVTELISTGLRDLVEGD 206
            ++ +L GDF+ A+    L  L N  V +LIS  ++D   G+
Sbjct: 203 TRVAVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGE 244


>At2g34630.1 68415.m04254 geranyl diphosphate synthase, putative /
           GPPS, putative / dimethylallyltransferase, putative /
           prenyl transferase, putative identical to GI:11322965 A.
           thaliana geranyl diphosphate synthase
          Length = 321

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 125 QRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLG 184
           QR +AEI EM     ++H  +++  D  +    + +++ GNK+ +L GDFLL++    L 
Sbjct: 62  QRGIAEITEMIHVASLLHDDVLDDADTRRGVGSL-NVVMGNKMSVLAGDFLLSRACGALA 120

Query: 185 GLRNNAVTELISTGLRDLVEGD 206
            L+N  V  L++T +  LV G+
Sbjct: 121 ALKNTEVVALLATAVEHLVTGE 142



 Score = 32.3 bits (70), Expect = 0.60
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 251 HGKDEWTLRTMLTSGSLLGKGCQAATKLAHLGEDAERNAYILGGHLAIMWQLYLDVKDFF 310
           +  D +  +T   + SL+   C+A   L     +    A+  G +L + +QL  D+ DF 
Sbjct: 154 YSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFT 213

Query: 311 THPYS----------YSLVGAPVIFAIWEYPTI 333
               S          + ++ AP++FA+ E+P +
Sbjct: 214 GTSASLGKGSLSDIRHGVITAPILFAMEEFPQL 246


>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 54  LFNDEIANTAIHLRKLVGTNHPLLKSAKNLLIGSKSN----LQSVGLII---LLVSKAAG 106
           +FND     AI  R   G NH + K+  + ++GSK N      SV L +   L  +  AG
Sbjct: 103 VFND--VEDAICYRNSYGQNHQIRKAVLSAVLGSKKNDHCYFSSVSLNVAKFLSWTDMAG 160

Query: 107 FDANYYNRDHYDSGVLHAQRALAEIVEMKRTGHMI 141
           +     N  + DS VL A     E+   K+    I
Sbjct: 161 YYVVEENLVYPDSPVLKAPELATEVSNWKKADQAI 195


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 59  IANTAIHLR-KLVGTNHPLLKSAKNLLIGSKSNLQSVGLIILL----VSKAAGFDANYYN 113
           + ++ +H+R K+ G N    K A++ L      LQ + LIIL+    VS   G     + 
Sbjct: 133 VRSSELHIREKIYGENRYTEKPARSFLTFVWEALQDITLIILMVCAVVSIGVGVATEGFP 192

Query: 114 RDHYD-SGVLHAQRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKV 158
           +  YD +G+L     L+ I+ +  T    +K  +  +D ++ K+K+
Sbjct: 193 KGMYDGTGIL-----LSIILVVMVTAISDYKQSLQFRDLDREKKKI 233


>At5g08280.1 68418.m00975 hydroxymethylbilane synthase /
           porphobilinogen deaminase, chloroplast /
           pre-uroporphyrinogen synthase identical to SP|Q43316
          Length = 382

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 151 KEKHKEKVKDLLYGNKIVLLTGDFLLAKCLQQLG--GLRNNAVTELISTGLRDL 202
           K+KH E V+D     +I+  TGD +L++ L  +G  GL    + E +  G  D+
Sbjct: 97  KKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDI 150


>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
           splice site at exon 6
          Length = 612

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 133 EMKRTGHMIHKAMVNLQDKEKHKEKVKDLLYGNKIVL-LTGDFLLAKCLQQLGGLRNNAV 191
           E+K       KA  N+ D  + +++     Y N+ VL    D    K + +L  L N  V
Sbjct: 285 ELKTVSEKRDKAYSNIHDLRRQRDETNSEYYQNRTVLNKARDLAAQKNISELEALANAEV 344

Query: 192 TELIS 196
            + IS
Sbjct: 345 EKFIS 349


>At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to gi:413730;
           similar to geranylgeranyl pyrophosphate synthase,
           chloroplast precursor GB:P34802 from [Arabidopsis
           thaliana]
          Length = 357

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 132 VEMKRTGHMIHKAMVNLQDKEKHKEK-VKDLLYGNKIVLLTGDFLLAKCLQQLGGLRNNA 190
           VEM  T  +IH  +  + D +  + K      +G  + +L GD LLA   + +  + N  
Sbjct: 131 VEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAFEHMTFVSNGL 190

Query: 191 V 191
           V
Sbjct: 191 V 191


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 13  FLSGQNNKLGLGQRDDAGWRDVVSEA 38
           F S QN+K  +GQ  D GW   + +A
Sbjct: 525 FYSSQNSKEAVGQSSDCGWTSRLDQA 550


>At2g03630.1 68415.m00323 hypothetical protein
          Length = 252

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 195 ISTGLRDLVEGDFFGEHDDNNNPIPTQPKATNKFETHYKWETEDNLEK--LGSNDFLGHG 252
           IS+    +++ D  G++D N  P     ++ +     +   + ++L    LG+N F G+G
Sbjct: 89  ISSPPVQVMDRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTGYG 148

Query: 253 KDEWTLRTMLTSGSLL 268
            D      +  SG LL
Sbjct: 149 GDLMKSGELYKSGELL 164


>At1g74390.1 68414.m08618 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 506

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 28  DAGWRDVVSEAEQIVGYPTSFLNLRWLFN--DEIANTAIHLR-KLVGTNHPLLKSAKNL 83
           ++ WR  V   E    YPT+ L++    N  D +  T ++ + + +GTN  L  S+ NL
Sbjct: 405 NSDWRPTVIRKEGFANYPTARLHISSESNGDDTLCGTQVYQKEEPLGTNQKLDVSSDNL 463


>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 72  TNHPLLKSAKNLLIGSKSNLQSVGLIILLVSKAAGFDANYYNRDHYDSGVLHAQRALAEI 131
           +  PL      L+ G ++ ++S GL++   S +  F A+ YN    +S    +Q   A +
Sbjct: 207 STEPLSFPTNVLVWGDQNQVRSAGLVVTEESPSGNFAAS-YNDHQQESSSTRSQEVTAVV 265

Query: 132 VEM 134
           V++
Sbjct: 266 VDI 268


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 125 QRALAEIVEMKRTGHMIHKAMVNLQDKEKHKEKV 158
           QR++AE+V+M R  +   K  VN+  +  H+ KV
Sbjct: 190 QRSMAEVVKMGRPQNKTTKQNVNMGSEINHEHKV 223


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,176
Number of Sequences: 28952
Number of extensions: 452221
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 14
length of query: 409
length of database: 12,070,560
effective HSP length: 83
effective length of query: 326
effective length of database: 9,667,544
effective search space: 3151619344
effective search space used: 3151619344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)