Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   1.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   1.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    19   8.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 34 QVSCAVDNQGNVILDPTH 51
          Q  C   ++G+ I+D TH
Sbjct: 71 QYVCKAKDEGSCIIDKTH 88


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 34 QVSCAVDNQGNVILDPTH 51
          Q  C   ++G+ I+D TH
Sbjct: 71 QYVCKAKDEGSCIIDKTH 88


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 42  QGNVILDPTHAQLQTSTATMTFVFDSRDKSLITCK 76
           +G+V +  TH Q Q  T  +T    S      TC+
Sbjct: 467 RGSVFVRFTHLQHQPFTYKITVNNQSNGNRKGTCR 501


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786
Number of Sequences: 317
Number of extensions: 429
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 114,650
effective HSP length: 46
effective length of query: 32
effective length of database: 100,068
effective search space:  3202176
effective search space used:  3202176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)