Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2530| Best HMM Match : RNase_PH_C (HMM E-Value=1.8e-06)             45   1e-05
SB_50806| Best HMM Match : EGF_CA (HMM E-Value=1e-27)                  28   1.2  
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  26   3.7  
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)                 26   4.9  
SB_18793| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_2530| Best HMM Match : RNase_PH_C (HMM E-Value=1.8e-06)
          Length = 93

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 30/40 (75%)

Query: 35 VSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLIT 74
          ++CA+  Q  ++LDPT  Q + +TA +TFVFDS +++L+T
Sbjct: 14 ITCAITEQDELVLDPTLEQERKATAVLTFVFDSVNQNLLT 53


>SB_50806| Best HMM Match : EGF_CA (HMM E-Value=1e-27)
          Length = 286

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 4   DMKDVQDFKLKPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVIL---DPTHAQLQTSTAT 60
           + KD+ +  LKP KC  N +  +   +   +       QGNV +    P  + ++  TAT
Sbjct: 183 ECKDIDECSLKPAKCSSNSICSNTQGSYKCECGEGFKMQGNVCIVSQMPLVSNVKVETAT 242


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 23  LSKSDGSAILSQVSCAVDNQGNVILDPT 50
           +S+ DGS  ++ +S  +D    V+LDPT
Sbjct: 808 VSELDGSNTMTLISSGLDKPSAVVLDPT 835


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 18  CEFNFLSKSDGSAILSQVSCAVDNQGNV 45
           C  +FL+ +  S +L ++S A  +QGN+
Sbjct: 162 CSLDFLTMAKSSPLLQKLSLAFCSQGNI 189


>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
          Length = 1073

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3   TDMKDVQDF-KLKPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQL 54
           T  K+  DF  L  +K   N   K D   +    +C +   G +ILD  H  L
Sbjct: 115 TTFKEEDDFLSLDDIKEAKNIDLKEDIDCLAEMNTCCIHKSGALILDLAHLSL 167


>SB_18793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 14 KPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSL 72
          + +KC+F+ +S SD   IL +    V  +    L P+ A   + T  M    D +  SL
Sbjct: 11 RSVKCDFHSISSSDLGGILRRFYAEVKTKDKKDLSPS-ALCSSETIEMKNSNDCKQGSL 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,366
Number of Sequences: 59808
Number of extensions: 67646
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 16,821,457
effective HSP length: 56
effective length of query: 22
effective length of database: 13,472,209
effective search space: 296388598
effective search space used: 296388598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)