Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058481-1|AAL13710.1|  233|Drosophila melanogaster GM01970p pro...    36   0.009
AE014297-1149|AAF54530.3|  233|Drosophila melanogaster CG4043-PA...    36   0.009
AE014134-2149|AAF53158.2|  300|Drosophila melanogaster CG14946-P...    29   0.78 
M59501-1|AAA28994.1|  462|Drosophila melanogaster tube protein p...    28   1.8  
AY061215-1|AAL28763.1|  462|Drosophila melanogaster LD16174p pro...    28   1.8  
AE014297-74|AAF52136.3|  462|Drosophila melanogaster CG10520-PA ...    28   1.8  
AE014298-2726|AAF48847.1|  494|Drosophila melanogaster CG15046-P...    27   3.1  
AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein ...    27   4.1  
AE013599-3816|AAF47165.3| 1669|Drosophila melanogaster CG4049-PA...    26   7.2  

>AY058481-1|AAL13710.1|  233|Drosophila melanogaster GM01970p
          protein.
          Length = 233

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVQDFKLKPMKCEFNFLSKSDGSAILSQ 34
          DV+  KL+ M CEFN LS+ DGS + SQ
Sbjct: 8  DVEKDKLRQMHCEFNPLSRCDGSVMYSQ 35



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 35  VSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           V   ++ QG  +LDP  ++     A+ TF FDS + +L+
Sbjct: 141 VHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLL 179


>AE014297-1149|AAF54530.3|  233|Drosophila melanogaster CG4043-PA
          protein.
          Length = 233

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 7  DVQDFKLKPMKCEFNFLSKSDGSAILSQ 34
          DV+  KL+ M CEFN LS+ DGS + SQ
Sbjct: 8  DVEKDKLRQMHCEFNPLSRCDGSVMYSQ 35



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 35  VSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           V   ++ QG  +LDP  ++     A+ TF FDS + +L+
Sbjct: 141 VHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLL 179


>AE014134-2149|AAF53158.2|  300|Drosophila melanogaster CG14946-PB
           protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 31  ILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLITC 75
           I S V C      NV + PTH  LQ S   +  VFD + +  I C
Sbjct: 127 IKSDVGCISVLVNNVGIMPTHPILQQSAEEIQRVFDEKCRGHIIC 171


>M59501-1|AAA28994.1|  462|Drosophila melanogaster tube protein
           protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 32  LSQVSCAVDNQGNVILDPTHAQLQTSTAT 60
           + +++  +DN G+V   P HA  + STAT
Sbjct: 320 IPRITLLIDNSGDVNSRPNHAPAKASTAT 348


>AY061215-1|AAL28763.1|  462|Drosophila melanogaster LD16174p
           protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 32  LSQVSCAVDNQGNVILDPTHAQLQTSTAT 60
           + +++  +DN G+V   P HA  + STAT
Sbjct: 320 IPRITLLIDNSGDVNSRPNHAPAKASTAT 348


>AE014297-74|AAF52136.3|  462|Drosophila melanogaster CG10520-PA
           protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 32  LSQVSCAVDNQGNVILDPTHAQLQTSTAT 60
           + +++  +DN G+V   P HA  + STAT
Sbjct: 320 IPRITLLIDNSGDVNSRPNHAPAKASTAT 348


>AE014298-2726|AAF48847.1|  494|Drosophila melanogaster CG15046-PA
           protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 34  QVSCAV-DNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLIT 74
           ++ C V D Q  V LDPT A   T+T T T    S   S  T
Sbjct: 78  KICCPVEDAQSEVRLDPTAATTSTTTTTTTTSTTSTTTSTTT 119


>AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein
           protein.
          Length = 951

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 7   DVQDFKLKPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATMT 62
           DV+  KL      F  LS SD  ++   +S +     N +  PT+   QTS AT T
Sbjct: 173 DVKGAKLSDAMGNFPSLSHSD--SMDKNLSSSTKIGPNALSPPTYTHTQTSKATYT 226


>AE013599-3816|AAF47165.3| 1669|Drosophila melanogaster CG4049-PA
            protein.
          Length = 1669

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 39   VDNQGNVILDPTHAQLQTSTATMT 62
            V+N G VI  P + Q++T+T++ T
Sbjct: 1293 VNNDGTVITKPMNQQIKTNTSSST 1316


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,653
Number of Sequences: 52641
Number of extensions: 100815
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 11
length of query: 78
length of database: 24,830,863
effective HSP length: 58
effective length of query: 20
effective length of database: 21,777,685
effective search space: 435553700
effective search space used: 435553700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)