Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44020.1 68418.m05387 acid phosphatase class B family protein...    28   0.68 
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera...    25   4.8  
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea...    25   6.4  
At2g19710.1 68415.m02303 expressed protein   contains Pfam profi...    25   6.4  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    25   6.4  

>At5g44020.1 68418.m05387 acid phosphatase class B family protein
           similar to SP|P15490 STEM 28 kDa glycoprotein precursor
           (Vegetative storage protein A) {Glycine max}, acid
           phosphatase [Glycine max] GI:3341443; contains Pfam
           profile PF03767: HAD superfamily (subfamily IIIB)
           phosphatase
          Length = 272

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 4   DMKDVQDFKLKPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATMTF 63
           ++ +++DFK+ P +C +        S     V  AVD +  + L  T  + +T      +
Sbjct: 64  ELNNIRDFKVVPQECVWFVQKYMTSSQYEDDVERAVD-EAILYLGKTCCEKKTCDGMDAW 122

Query: 64  VFDSRDKSLITCKF 77
           +FD  D  L T  +
Sbjct: 123 IFDIDDTLLSTIPY 136


>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 450

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 19  EFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHA 52
           EF  L K D   IL Q S  +D+  N+IL+ T A
Sbjct: 174 EFPPLRKKDLLQILDQESEQLDSYSNMILETTKA 207


>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
           similarity to SP|Q9UTK5 Abnormal long morphology protein
           1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
           profile PF00787: PX domain
          Length = 643

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 2   VTDMK-DVQDFKLKPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTAT 60
           VT M+ D+++ + K  + E    SK DGS+  S+ S      GN  +  +H  LQ   AT
Sbjct: 449 VTKMQWDMEELRQKTFEMELKLKSKEDGSSD-SKTS------GNSTISESHELLQEMDAT 501


>At2g19710.1 68415.m02303 expressed protein   contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 937

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 24  SKSDGSAILSQVSCAVDNQGNVILDPTHA-QLQTSTATMTFVFDSRD 69
           S+SDG   + +VS  V  +GN+  D +H  ++  S     F  D+ +
Sbjct: 621 SESDGDQPIDKVSGDVHERGNLTSDRSHKFKVSDSAGHEVFPLDTEE 667


>At1g79280.1 68414.m09242 expressed protein weak similarity to
          Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 24 SKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSR 68
          +K+D ++I ++ +C++  Q  + L    + L++  A +   FD R
Sbjct: 41 AKADAASITAEQTCSLLEQKYLSLSQDFSSLESQNAKLQSDFDDR 85


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,323
Number of Sequences: 28952
Number of extensions: 47513
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 5
length of query: 78
length of database: 12,070,560
effective HSP length: 57
effective length of query: 21
effective length of database: 10,420,296
effective search space: 218826216
effective search space used: 218826216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)