GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594...    27   2.5  
11_03_0224 + 11886184-11886190,11886582-11886871,11887424-11887516     26   4.4  
05_04_0060 + 17576427-17578781                                         25   7.7  
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477...    25   7.7  

>01_01_0769 -
          5944910-5946613,5946768-5946887,5948243-5948300,
          5948544-5948627,5949356-5949456,5949562-5949745,
          5950746-5950774,5951134-5951226
          Length = 790

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 1  MVTDMKDVQDFKLKPMKCEFNFLSKSDGSAILSQVSCA 38
          + T+  D+ D +LKP KC +  +   D ++IL ++ CA
Sbjct: 11 LCTEEMDLTDKQLKPCKCGYEDIIIKDLTSILKEL-CA 47


>11_03_0224 +
          11886184-11886190,11886582-11886871,11887424-11887516
          Length = 129

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 35 VSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDK 70
          ++CA+ ++ NV+ DPT  +      ++T V DS D+
Sbjct: 47 LTCAL-HKDNVLADPTAEEESIIETSVTIVLDSSDQ 81


>05_04_0060 + 17576427-17578781
          Length = 784

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 29  SAILSQVSCAVDNQGNVILDPTH 51
           SAI++  S AVDN G+ I+D  H
Sbjct: 575 SAIMT-TSSAVDNDGHAIMDEEH 596


>02_03_0394 +
           18546089-18546323,18546784-18546986,18547598-18547787,
           18548624-18549015,18549495-18550055
          Length = 526

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 29  SAILSQVSCAVDNQGNVILDPTHAQLQTSTATMTF 63
           +AIL + S   D  GNVI   T    + +TAT  F
Sbjct: 88  NAILREPSAPKDANGNVISAQTFTFRELATATRNF 122


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,130
Number of Sequences: 37544
Number of extensions: 53626
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 14,793,348
effective HSP length: 57
effective length of query: 21
effective length of database: 12,653,340
effective search space: 265720140
effective search space used: 265720140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)