GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107696-1|AAI07697.1|  235|Homo sapiens exosome component 5 pro...    42   2e-04
BC007742-1|AAH07742.1|  235|Homo sapiens exosome component 5 pro...    42   2e-04
AF285785-1|AAM75154.1|  268|Homo sapiens chronic myelogenous leu...    42   2e-04
AF281134-1|AAF82135.1|  235|Homo sapiens exosome component Rrp46...    42   2e-04

>BC107696-1|AAI07697.1|  235|Homo sapiens exosome component 5
           protein.
          Length = 235

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 30  AILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           A+   V+CA+D+ G ++LDPT  Q + + A +TF  DS ++ L+
Sbjct: 150 ALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLL 193


>BC007742-1|AAH07742.1|  235|Homo sapiens exosome component 5
           protein.
          Length = 235

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 30  AILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           A+   V+CA+D+ G ++LDPT  Q + + A +TF  DS ++ L+
Sbjct: 150 ALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLL 193


>AF285785-1|AAM75154.1|  268|Homo sapiens chronic myelogenous
           leukemia tumor antigen 28 protein.
          Length = 268

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 30  AILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           A+   V+CA+D+ G ++LDPT  Q + + A +TF  DS ++ L+
Sbjct: 183 ALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLL 226


>AF281134-1|AAF82135.1|  235|Homo sapiens exosome component Rrp46
           protein.
          Length = 235

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 30  AILSQVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLI 73
           A+   V+CA+D+ G ++LDPT  Q + + A +TF  DS ++ L+
Sbjct: 150 ALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLL 193


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,697
Number of Sequences: 224733
Number of extensions: 272031
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 73,234,838
effective HSP length: 57
effective length of query: 21
effective length of database: 60,425,057
effective search space: 1268926197
effective search space used: 1268926197
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)