GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000822-TA|BGIBMGA000822-PA|undefined
         (78 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical pr...    31   0.073
AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell death-re...    31   0.073
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   8.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   8.4  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    25   8.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   8.4  
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    25   8.4  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    25   8.4  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical
          protein C14A4.5 protein.
          Length = 214

 Score = 31.5 bits (68), Expect = 0.073
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 12 KLKPMKCEFNFLSKSDGSAILSQ 34
          +L+ M+CE +FL  +DGSA  SQ
Sbjct: 4  RLREMRCELSFLKNADGSACFSQ 26


>AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell
          death-related nuclease 5 protein.
          Length = 214

 Score = 31.5 bits (68), Expect = 0.073
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 12 KLKPMKCEFNFLSKSDGSAILSQ 34
          +L+ M+CE +FL  +DGSA  SQ
Sbjct: 4  RLREMRCELSFLKNADGSACFSQ 26


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
           protein R13G10.1 protein.
          Length = 1469

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 14  KPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATM 61
           K  + E   L K   +  L+Q+    D +G   +D  +AQLQTSTA++
Sbjct: 952 KLSELEHMCLEKRSEADALAQLEVGEDVKG---IDIINAQLQTSTASI 996


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 39   VDNQGNVILDPTHAQLQTSTAT 60
            VDNQGN IL PT      S  T
Sbjct: 2516 VDNQGNYILLPTEIDAAQSLPT 2537


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 39   VDNQGNVILDPTHAQLQTSTAT 60
            VDNQGN IL PT      S  T
Sbjct: 2579 VDNQGNYILLPTEIDAAQSLPT 2600


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
           condensation protein protein.
          Length = 1469

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 14  KPMKCEFNFLSKSDGSAILSQVSCAVDNQGNVILDPTHAQLQTSTATM 61
           K  + E   L K   +  L+Q+    D +G   +D  +AQLQTSTA++
Sbjct: 952 KLSELEHMCLEKRSEADALAQLEVGEDVKG---IDIINAQLQTSTASI 996


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 39   VDNQGNVILDPTHAQLQTSTAT 60
            VDNQGN IL PT      S  T
Sbjct: 2579 VDNQGNYILLPTEIDAAQSLPT 2600


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)

Query: 27  DGSAILSQVSCA 38
           DGSAILSQ+ CA
Sbjct: 701 DGSAILSQLQCA 712


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/12 (83%), Positives = 11/12 (91%)

Query: 27  DGSAILSQVSCA 38
           DGSAILSQ+ CA
Sbjct: 701 DGSAILSQLQCA 712


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 34  QVSCAVDNQGNVILDPTHAQLQTSTATMTFVFDSRDKSLIT 74
           QVSC     G     PT      ST+T+  VFD R   L+T
Sbjct: 563 QVSCRRRQAGFQKCIPTEMSFN-STSTLPTVFDVRHMGLLT 602


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,886
Number of Sequences: 27539
Number of extensions: 54091
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 22
length of query: 78
length of database: 12,573,161
effective HSP length: 58
effective length of query: 20
effective length of database: 10,975,899
effective search space: 219517980
effective search space used: 219517980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)