Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
         (257 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35430.1 68418.m04213 expressed protein                             31   0.76 
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    28   7.1  
At1g51580.1 68414.m05806 KH domain-containing protein                  28   7.1  

>At5g35430.1 68418.m04213 expressed protein
          Length = 786

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 137 DSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECM 184
           DSR + +++ +VR +SSL+ + AV ++ S L   A ++  SG+  EC+
Sbjct: 2   DSR-DSLSSDAVRDASSLSDDAAVLSVTSTLAKTALSYFQSGKFEECI 48


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
            to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
            protein homolog 3) {Homo sapiens}; contains Pfam profiles
            PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
            HSP90-like domain protein, PF01119: DNA mismatch repair
            protein, C-terminal domain
          Length = 1151

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/62 (33%), Positives = 26/62 (41%)

Query: 130  LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 189
            L  +LS+   LE +   +    SS  P   +  L S    GA  F  S   SEC  I  G
Sbjct: 1031 LGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSECSLIIDG 1090

Query: 190  LK 191
            LK
Sbjct: 1091 LK 1092


>At1g51580.1 68414.m05806 KH domain-containing protein
          Length = 621

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 163 LRSNLWPGAAAFATSGQKSECMYIGWGLKFDPPNYGPAQLPRPQDEY--PIGP 213
           LR  ++PG   F   G      ++G      PP +GP Q P   D Y  P+GP
Sbjct: 432 LREAMFPGRLPFQGMGGPPP-PFMG-PYPEPPPPFGPRQYPASPDRYHSPVGP 482


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,633,300
Number of Sequences: 28952
Number of extensions: 167404
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 12,070,560
effective HSP length: 80
effective length of query: 177
effective length of database: 9,754,400
effective search space: 1726528800
effective search space used: 1726528800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)