GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
         (257 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    27   0.19 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.0  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 196 NYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYR 230
           NY P+Q P P+   P+   V    +PT  +E+ +R
Sbjct: 215 NYSPSQSPEPESVRPLSLVVRRCEEPT--EEKPWR 247


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 203 PRPQDEYPIGPEVMEMADP 221
           P P  E P+ PE   +A P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 51  PPPEIPVERPGQGVNKKV 68
           PP  IP++ PG  +N  V
Sbjct: 185 PPAGIPLQNPGLNLNPPV 202


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 151 SSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKF 192
           SS+  PE+     + N++       T G + +  YI WG+KF
Sbjct: 20  SSTQMPEKVRE--KWNVFDDPPREPTVGSEVKRTYIEWGVKF 59


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 151 SSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKF 192
           SS+  PE+     + N++       T G + +  YI WG+KF
Sbjct: 20  SSTQMPEKVRE--KWNVFDDPPREPTVGSEVKRTYIEWGVKF 59


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 197 YGPAQLPRPQDEYPIGPEVMEMAD 220
           YGP Q    Q+  P  P  M MA+
Sbjct: 97  YGPQQQMDGQEYRPDSPSSMHMAN 120


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,414
Number of Sequences: 317
Number of extensions: 1743
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 114,650
effective HSP length: 55
effective length of query: 202
effective length of database: 97,215
effective search space: 19637430
effective search space used: 19637430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)