GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    29   2.8  
07_03_0723 + 20954827-20954905,20954974-20956277                       29   4.9  
09_04_0740 + 19850745-19851254                                         28   6.4  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    28   6.4  
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     28   8.5  
01_04_0074 + 15760667-15761815                                         28   8.5  

>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 52   PPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRC 99
            P  +  +  G  V     WVC    E+W C+P    D+I    L   C
Sbjct: 1224 PAVVACKTDGASVPPAPAWVCCDDCEKWRCIPTELADKISKENLRWTC 1271


>07_03_0723 + 20954827-20954905,20954974-20956277
          Length = 460

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 63  GVNKKVFWVCNHPGEQWICLPD 84
           GV+K  + VCN   E+W+ LPD
Sbjct: 212 GVSKFHYAVCNPATEEWVMLPD 233


>09_04_0740 + 19850745-19851254
          Length = 169

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 154 LTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWGLKFDPPNYG 198
           +TP  A A  R   +PG AA AT+       + G G    PP  G
Sbjct: 123 ITPPSAAAVPRPATFPGLAAAATAAVPRPPPFTGAGAAPSPPKSG 167


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 142 GMTAWSVRSSSSLTPERAVAALRSNLW-PGAAAFATSGQKSECMYIGWGLKFDPPNYGPA 200
           GMT W         P     AL    + PG A             +G G++  P  Y PA
Sbjct: 17  GMTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQVVYWAPSPGAPSLG-GIRAPPAPYQPA 75

Query: 201 QLPRPQDEYPIGPEV-MEMADPTFADEEA 228
           Q+  PQ   P    +  E+    F  E A
Sbjct: 76  QVAAPQAAAPFAAALAKEVEQKLFVTENA 104


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 202 LPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
           LP P D +   P VME +DPT   E  +R+
Sbjct: 68  LPLPYDPFSKKPAVMEPSDPTNLQEVFHRM 97


>01_04_0074 + 15760667-15761815
          Length = 382

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 69  FWVCNHPGEQWICLPDVTP 87
           F VCN   ++WI LPD  P
Sbjct: 120 FIVCNPATQEWIALPDTCP 138


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,079,323
Number of Sequences: 37544
Number of extensions: 232915
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 14,793,348
effective HSP length: 81
effective length of query: 176
effective length of database: 11,752,284
effective search space: 2068401984
effective search space used: 2068401984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)