Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
(257 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0) 69 3e-12
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 28 6.6
SB_41171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_20076| Best HMM Match : Reticulon (HMM E-Value=3.9) 28 8.7
SB_19007| Best HMM Match : rve (HMM E-Value=2e-12) 28 8.7
SB_39147| Best HMM Match : Reticulon (HMM E-Value=3.9) 28 8.7
SB_38043| Best HMM Match : Reticulon (HMM E-Value=5.7) 28 8.7
SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72) 28 8.7
SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11) 28 8.7
>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
Length = 375
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 47 STWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLDA 106
S W+PPP IP E G NKKV++V PG+ WI LP VTP QI ++R + +TG LDA
Sbjct: 99 SDWKPPPVIPKEENRAGANKKVYFVTTEPGKPWIKLPPVTPAQIGISRQIRKFLTGRLDA 158
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 180 KSECMYIGWGLKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRIA 232
K E +YIGWG K+D NY P P +EYP PEV E+ DPT +E A + A
Sbjct: 301 KFENIYIGWGHKYDASNYTPPPPPPTMEEYPTVPEVTEVDDPTVEEERALKKA 353
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 195 PNYGPAQL-PRPQD--EYPIGPEVMEMADPTFADEEAYRIA 232
P GP L P +D EYP GP++ E DP+ +E+A + A
Sbjct: 424 PETGPPLLTPLSEDGEEYPSGPDITEAEDPSVEEEKALKAA 464
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 48 TWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNL 104
TWQP PE G + VF+ +H G CL V + V L + TG L
Sbjct: 1512 TWQPIPEKNTN--GDLLGYHVFYQESHTGNSTPCLVTVDRSSLAVQLLNLTPYTGYL 1566
>SB_41171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 135 SEDSRLEGMTAWSVRSSSSLTPERAV 160
S RL+G+ +WS RS+ PE+ +
Sbjct: 31 STPGRLDGLDSWSPRSNPGYAPEKGI 56
>SB_20076| Best HMM Match : Reticulon (HMM E-Value=3.9)
Length = 225
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 96 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 127
>SB_19007| Best HMM Match : rve (HMM E-Value=2e-12)
Length = 539
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 96 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 127
>SB_39147| Best HMM Match : Reticulon (HMM E-Value=3.9)
Length = 216
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 87 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 118
>SB_38043| Best HMM Match : Reticulon (HMM E-Value=5.7)
Length = 216
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 87 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 118
>SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)
Length = 256
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 87 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 118
>SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11)
Length = 597
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 198 GPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRI 231
GP L RP+ E+P+ E++E P EE R+
Sbjct: 413 GPQWLARPESEWPVTEEIVE--TPESCAEECKRV 444
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,497,658
Number of Sequences: 59808
Number of extensions: 233206
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 13
length of query: 257
length of database: 16,821,457
effective HSP length: 81
effective length of query: 176
effective length of database: 11,977,009
effective search space: 2107953584
effective search space used: 2107953584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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