Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
(257 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein. 116 1e-25
AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1... 116 1e-25
AL132795-2|CAI20497.1| 716|Homo sapiens protein ( Human DNA seq... 112 1e-24
AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA seq... 112 1e-24
BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein. 60 6e-09
BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein. 32 2.3
AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibilit... 32 2.3
AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibilit... 32 2.3
AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibilit... 32 2.3
AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibilit... 32 2.3
AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open readi... 32 2.3
AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein pr... 32 2.3
AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein pr... 32 2.3
AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein. 32 2.3
>BC057785-1|AAH57785.1| 716|Homo sapiens RSHL1 protein protein.
Length = 716
Score = 116 bits (278), Expect = 1e-25
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 189
L T LSED+ + + W+ R S SL P+ +VA +RSNLWPGA A+A SG+K E +YIGWG
Sbjct: 590 LLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYA-SGKKFENIYIGWG 648
Query: 190 LKFDPPNYGPAQLPRP-QDEYPIGPEVMEMADPTFADEEAYRIA 232
K+ P ++ PA LP P Q EYP GPE+MEM+DPT +E+A + A
Sbjct: 649 HKYSPESFNPA-LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAA 691
Score = 64.9 bits (151), Expect = 3e-10
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 47 STWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLD 105
S W+PPP IP E G NK +++VCN PG W LP VTP QI AR + TG LD
Sbjct: 405 SVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLD 463
>AK223347-1|BAD97067.1| 717|Homo sapiens radial spokehead-like 1
variant protein.
Length = 717
Score = 116 bits (278), Expect = 1e-25
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 189
L T LSED+ + + W+ R S SL P+ +VA +RSNLWPGA A+A SG+K E +YIGWG
Sbjct: 591 LLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYA-SGKKFENIYIGWG 649
Query: 190 LKFDPPNYGPAQLPRP-QDEYPIGPEVMEMADPTFADEEAYRIA 232
K+ P ++ PA LP P Q EYP GPE+MEM+DPT +E+A + A
Sbjct: 650 HKYSPESFNPA-LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAA 692
Score = 64.9 bits (151), Expect = 3e-10
Identities = 30/59 (50%), Positives = 35/59 (59%)
Query: 47 STWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLD 105
S W+PPP IP E G NK +++VCN PG W LP VTP QI AR + TG LD
Sbjct: 406 SVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLD 464
>AL132795-2|CAI20497.1| 716|Homo sapiens protein ( Human DNA
sequence from clone RP3-412I7 on chromosome
6q22.1-22.33. ).
Length = 716
Score = 112 bits (269), Expect = 1e-24
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 189
L T +SED ++ + W+ R SS+L P+ A+A L+SNLWPGA AF+ +G+K E YIGWG
Sbjct: 591 LLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFS-NGKKFENFYIGWG 649
Query: 190 LKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRIA 232
K+ P NY P P EYP GPE+ EM DP+ +E+A+R A
Sbjct: 650 HKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAA 692
Score = 60.5 bits (140), Expect = 6e-09
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 47 STWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLDA 106
S ++ P IP E G NK V++VCN PG W+ LP V P QI +AR + TG LDA
Sbjct: 409 SFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDA 468
>AL132795-1|CAI20496.1| 469|Homo sapiens protein ( Human DNA
sequence from clone RP3-412I7 on chromosome
6q22.1-22.33. ).
Length = 469
Score = 112 bits (269), Expect = 1e-24
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERAVAALRSNLWPGAAAFATSGQKSECMYIGWG 189
L T +SED ++ + W+ R SS+L P+ A+A L+SNLWPGA AF+ +G+K E YIGWG
Sbjct: 344 LLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFS-NGKKFENFYIGWG 402
Query: 190 LKFDPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAYRIA 232
K+ P NY P P EYP GPE+ EM DP+ +E+A+R A
Sbjct: 403 HKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAA 445
>BC106949-1|AAI06950.1| 600|Homo sapiens RSHL3 protein protein.
Length = 600
Score = 60.5 bits (140), Expect = 6e-09
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 47 STWQPPPEIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLDA 106
S ++ P IP E G NK V++VCN PG W+ LP V P QI +AR + TG LDA
Sbjct: 409 SFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDA 468
>BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open reading
frame 17 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
>AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 193 DPPNYGPAQLPRPQDEYPIGPEVME 217
+PP P Q PRP D +P GP+ E
Sbjct: 85 EPPRTDPPQPPRPDDPWPAGPQPPE 109
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.133 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,462,403
Number of Sequences: 224733
Number of extensions: 1290928
Number of successful extensions: 2501
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 17
length of query: 257
length of database: 73,234,838
effective HSP length: 88
effective length of query: 169
effective length of database: 53,458,334
effective search space: 9034458446
effective search space used: 9034458446
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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