GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
         (257 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094708-1|AAM11061.1|  708|Drosophila melanogaster GH13165p pro...    68   1e-11
AE013599-3771|AAF47136.1|  708|Drosophila melanogaster CG3121-PA...    68   1e-11
AY047530-1|AAK77262.1|  784|Drosophila melanogaster GH03554p pro...    29   6.3  
AE014297-2286|AAF55372.1|  784|Drosophila melanogaster CG16941-P...    29   6.3  

>AY094708-1|AAM11061.1|  708|Drosophila melanogaster GH13165p
           protein.
          Length = 708

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERA-VAALRSNLWPGAAAFATSGQKSECMYIGW 188
           + +S + D   E   +W  R +S  T ++  +  ++SN+WPGA  F    +  E +Y+GW
Sbjct: 575 ILSSCANDMNPEVPVSWLARMTSKYTNQKERMLVMQSNVWPGAYTFIFE-KTCESIYLGW 633

Query: 189 GLKFDPPNYGPAQLPRPQDEYPIGPE-VMEMADPTFADEEAYR 230
           G K+   N     LP  Q+E+P  PE  +E  DPT  +EEAY+
Sbjct: 634 GHKYYARNIPFKHLPMVQEEFPHNPEDFVEANDPTVEEEEAYK 676



 Score = 45.2 bits (102), Expect = 9e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 54  EIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLDA 106
           +IP E  G+G N+  ++V N   + WI LP VTP QI V+R   + +TG+L+A
Sbjct: 345 DIPPEFIGKGCNRYSYFVVNSLFDDWIELPIVTPRQIVVSRQIKKFLTGDLEA 397


>AE013599-3771|AAF47136.1|  708|Drosophila melanogaster CG3121-PA
           protein.
          Length = 708

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 130 LFTSLSEDSRLEGMTAWSVRSSSSLTPERA-VAALRSNLWPGAAAFATSGQKSECMYIGW 188
           + +S + D   E   +W  R +S  T ++  +  ++SN+WPGA  F    +  E +Y+GW
Sbjct: 575 ILSSCANDMNPEVPVSWLARMTSKYTNQKERMLVMQSNVWPGAYTFIFE-KTCESIYLGW 633

Query: 189 GLKFDPPNYGPAQLPRPQDEYPIGPE-VMEMADPTFADEEAYR 230
           G K+   N     LP  Q+E+P  PE  +E  DPT  +EEAY+
Sbjct: 634 GHKYYARNIPFKHLPMVQEEFPHNPEDFVEANDPTVEEEEAYK 676



 Score = 45.2 bits (102), Expect = 9e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 54  EIPVERPGQGVNKKVFWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNLDA 106
           +IP E  G+G N+  ++V N   + WI LP VTP QI V+R   + +TG+L+A
Sbjct: 345 DIPPEFIGKGCNRYSYFVVNSLFDDWIELPIVTPRQIVVSRQIKKFLTGDLEA 397


>AY047530-1|AAK77262.1|  784|Drosophila melanogaster GH03554p
           protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 191 KFDPPNYGPAQLPRPQDEYPIGP 213
           K+DP    P Q P P DEY I P
Sbjct: 400 KYDPKATQPKQAPMPTDEYLISP 422


>AE014297-2286|AAF55372.1|  784|Drosophila melanogaster CG16941-PA
           protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 191 KFDPPNYGPAQLPRPQDEYPIGP 213
           K+DP    P Q P P DEY I P
Sbjct: 400 KYDPKATQPKQAPMPTDEYLISP 422


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,553
Number of Sequences: 52641
Number of extensions: 374184
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 24,830,863
effective HSP length: 83
effective length of query: 174
effective length of database: 20,461,660
effective search space: 3560328840
effective search space used: 3560328840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)