GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000821-TA|BGIBMGA000821-PA|IPR006802|Radial
spokehead-like protein
         (257 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF087133-1|AAD14595.1|  728|Caenorhabditis elegans alternatively...    28   7.6  
AF087132-1|AAD14594.1|  792|Caenorhabditis elegans alternatively...    28   7.6  
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively...    28   7.6  

>Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical
           protein F20D1.3 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 61  GQGVNKKV-FWVCNHPGEQWICLPDVTPDQIRVARLTVRCMTGNL 104
           G G  + + +WV N    QW+ +P   P  +   RLT  C +GN+
Sbjct: 275 GSGFERLLDYWVLNTQTFQWLQIPSQMPCPLIEPRLTA-CHSGNI 318


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 403 DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 439


>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
           protein ZC504.4c protein.
          Length = 1096

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 418 DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 454


>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
           protein ZC504.4a protein.
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 418 DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 454


>AF087133-1|AAD14595.1|  728|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 50  DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 86


>AF087132-1|AAD14594.1|  792|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 123 DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 159


>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 193 DPPNYGPAQLPRPQDEYPIGPEVMEMADPTFADEEAY 229
           D P + PA  PRP   +   P+    A P  AD   Y
Sbjct: 418 DGPRHSPASRPRPVSHHQRSPQQSHPAAPHLADLANY 454


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,769,390
Number of Sequences: 27539
Number of extensions: 178042
Number of successful extensions: 295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 12,573,161
effective HSP length: 80
effective length of query: 177
effective length of database: 10,370,041
effective search space: 1835497257
effective search space used: 1835497257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)