BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial spokehead-like protein (177 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 25 4.8 SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 4.8 SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 4.8 SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 25 6.4 SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 8.5 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 25.4 bits (53), Expect = 4.8 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 25 PDVVDH-FEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAV 62 PD V H F Q +++ + F P+F +PPQ +V Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSV 322 >SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizosaccharomyces pombe|chr 3|||Manual Length = 457 Score = 25.4 bits (53), Expect = 4.8 Identities = 13/41 (31%), Positives = 18/41 (43%) Query: 4 KPSSRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFR 44 KPS+ Y L+D+ D + HF KQ K+R Sbjct: 266 KPSNTYQALLDLSVDAKGSSLADSLKHFVHAEKLTKQNKYR 306 >SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 818 Score = 25.4 bits (53), Expect = 4.8 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 18 KILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEEMFRLV 73 K L + ++ + Q Q+ + ++P L D Y S PQ A +RR+ E V Sbjct: 80 KQLEGETLEISRYHSQIIGQIASQVYKP----LIDYYTSSPQTATLRRLAERLSTV 131 >SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|||Manual Length = 565 Score = 25.0 bits (52), Expect = 6.4 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Query: 8 RYDHLVDVVQKILSQKPPDVVDHFEQYSW-QVKQ--EKFRPNFDLLND 52 +YD +D V K + + P+ HFE + K+ + +RP+ ND Sbjct: 224 QYDSFLDNVIKAIREVFPEAFIHFEDFGLANAKRILDHYRPDIACFND 271 >SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 424 Score = 24.6 bits (51), Expect = 8.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 1 MLAKPSSRYDHLVDVVQKILSQKPPDVVDHFE 32 + AK + +L V + SQ PP+VV +FE Sbjct: 223 LFAKKREEFQNLGTVGPTLPSQVPPEVVYNFE 254 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.323 0.139 0.425 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 724,887 Number of Sequences: 5004 Number of extensions: 25292 Number of successful extensions: 55 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 5 length of query: 177 length of database: 2,362,478 effective HSP length: 68 effective length of query: 109 effective length of database: 2,022,206 effective search space: 220420454 effective search space used: 220420454 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (22.0 bits) S2: 51 (24.6 bits)
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