Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 17  QKILSQKPPDVVDHFEQYSWQ--VKQEKFRPNFDLLNDVYLSPPQ 59
           QK +  K   V++   Q      ++ E     FD++ ++Y+  PQ
Sbjct: 612 QKDIDVKTVQVIEDAAQKKKHRAIRPEPIDAQFDIIQNIYIPEPQ 656


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 26  DVVDHFEQYSWQVKQE 41
           D+  H EQ SW VK+E
Sbjct: 95  DLNAHREQMSWPVKKE 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,983
Number of Sequences: 429
Number of extensions: 1876
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)