GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   4.8  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   4.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   4.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   6.4  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   8.5  

>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 25  PDVVDH-FEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAV 62
           PD V H F Q  +++ +  F P+F        +PPQ +V
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSV 322


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 4   KPSSRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFR 44
           KPS+ Y  L+D+          D + HF       KQ K+R
Sbjct: 266 KPSNTYQALLDLSVDAKGSSLADSLKHFVHAEKLTKQNKYR 306


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 18  KILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEEMFRLV 73
           K L  +  ++  +  Q   Q+  + ++P    L D Y S PQ A +RR+ E    V
Sbjct: 80  KQLEGETLEISRYHSQIIGQIASQVYKP----LIDYYTSSPQTATLRRLAERLSTV 131


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 8   RYDHLVDVVQKILSQKPPDVVDHFEQYSW-QVKQ--EKFRPNFDLLND 52
           +YD  +D V K + +  P+   HFE +     K+  + +RP+    ND
Sbjct: 224 QYDSFLDNVIKAIREVFPEAFIHFEDFGLANAKRILDHYRPDIACFND 271


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 1   MLAKPSSRYDHLVDVVQKILSQKPPDVVDHFE 32
           + AK    + +L  V   + SQ PP+VV +FE
Sbjct: 223 LFAKKREEFQNLGTVGPTLPSQVPPEVVYNFE 254


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,887
Number of Sequences: 5004
Number of extensions: 25292
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)