GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    30   0.92 
10_08_0842 - 20954712-20957738                                         27   8.6  

>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 25  PDVVDHFEQYSWQVKQEKFRPNFDLLNDVY 54
           P+V +HFE  +W V   K RP  D+L D+Y
Sbjct: 223 PEVRNHFEIRTWTVLPPKCRP-ADVLRDIY 251


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/28 (28%), Positives = 21/28 (75%)

Query: 12  LVDVVQKILSQKPPDVVDHFEQYSWQVK 39
           +++ V++++S+ PPD+V +F++   Q +
Sbjct: 454 ILNSVKRLISRNPPDIVLYFDRLDMQTR 481


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,361,013
Number of Sequences: 37544
Number of extensions: 140680
Number of successful extensions: 290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)