GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)                55   4e-08
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    30   1.2  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 3/157 (1%)

Query: 2   LAKPSSRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLA 61
           LA    +YDHL  V+ ++L+ +P    +  ++     K+  F+PNFD + D      ++ 
Sbjct: 133 LAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQDDSTEVL 192

Query: 62  VVRRIEEMFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGLPDS 121
           + R  + +F                         +  P I +L +   YF++ G GL   
Sbjct: 193 LARTQQTLFERRPEKSFIEPEPEPDPELDEDLLESPLPDIMELAN---YFEQAGVGLNRE 249

Query: 122 ECYAVYIALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           E + +++AL  L    P+ + R +GKI G + NY +A
Sbjct: 250 ETFRIFLALKQLVDSHPIRSCRLWGKILGLQGNYIIA 286


>SB_44868| Best HMM Match : Radial_spoke (HMM E-Value=0)
          Length = 375

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query: 109 YYFKECGFGLPDSECYAVYIALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           +YF++ G GL   E + ++++L  L   +P+ TV F+GK++G + NYY+A
Sbjct: 5   FYFEQAGIGLSREEMFRIFLSLKQLVDSKPLQTVHFWGKLFGIENNYYIA 54


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 99  PRIADLIDSNYYFKECGFGLPDSECYA 125
           PRI DL++     K+ GF LPDS  YA
Sbjct: 393 PRITDLVNQIAQEKQLGFTLPDSGHYA 419


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 1   MLAKPSSRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFR-----PNFDLLNDVYL 55
           +L++  S Y H  +  +  + ++ P +VDH +        +KF      P    L+DV  
Sbjct: 740 LLSQSLSSYSHSTESDRVRIQEQSPQMVDHLQPSFVPTNVQKFNWDRTSPTSTNLSDVLA 799

Query: 56  SPPQ-LAVVRRIEEMFR 71
           S  Q +AV +R + + R
Sbjct: 800 SVRQGVAVSKRADPVLR 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,930
Number of Sequences: 59808
Number of extensions: 160935
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 16,821,457
effective HSP length: 78
effective length of query: 99
effective length of database: 12,156,433
effective search space: 1203486867
effective search space used: 1203486867
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)