GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.        75   1e-13
AL132795-2|CAI20497.1|  716|Homo sapiens protein ( Human DNA seq...    75   1e-13
BC057785-1|AAH57785.1|  716|Homo sapiens RSHL1 protein protein.        74   3e-13
AK223347-1|BAD97067.1|  717|Homo sapiens radial spokehead-like 1...    74   3e-13
AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA seq...    44   4e-04

>BC106949-1|AAI06950.1|  600|Homo sapiens RSHL3 protein protein.
          Length = 600

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 9   YDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEE 68
           YDHL +++ KIL+++P + VD FE  S  VK   F   FD L +     P   +  + + 
Sbjct: 230 YDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKA 289

Query: 69  MFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGLPDSECYAVYI 128
           +F                         N  P +   ++S +YF++ G GL   E Y +++
Sbjct: 290 LF-------LQGHLEGVDQELEDEIAENALPNV---MESAFYFEQAGVGLGTDETYRIFL 339

Query: 129 ALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           AL  L    P+   RF+GKI G + NY VA
Sbjct: 340 ALKQLTDTHPIQRCRFWGKILGLEMNYIVA 369


>AL132795-2|CAI20497.1|  716|Homo sapiens protein ( Human DNA
           sequence from clone RP3-412I7 on chromosome
           6q22.1-22.33. ).
          Length = 716

 Score = 75.4 bits (177), Expect = 1e-13
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 9   YDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEE 68
           YDHL +++ KIL+++P + VD FE  S  VK   F   FD L +     P   +  + + 
Sbjct: 230 YDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKA 289

Query: 69  MFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGLPDSECYAVYI 128
           +F                         N  P +   ++S +YF++ G GL   E Y +++
Sbjct: 290 LF-------LQGHLEGVDQELEDEIAENALPNV---MESAFYFEQAGVGLGTDETYRIFL 339

Query: 129 ALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           AL  L    P+   RF+GKI G + NY VA
Sbjct: 340 ALKQLTDTHPIQRCRFWGKILGLEMNYIVA 369


>BC057785-1|AAH57785.1|  716|Homo sapiens RSHL1 protein protein.
          Length = 716

 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 7   SRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRI 66
           S Y+HLV+++ KIL+Q+P D +   E  +   + E F P  D L D     P++    ++
Sbjct: 215 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRD----DPEMQPTYKM 270

Query: 67  EEMFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGLPDSECYAV 126
            E     K                       +  + +++++ +YF++ G GL   E + +
Sbjct: 271 AE-----KQKALFTRSGGGTEGEQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRI 325

Query: 127 YIALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           ++A+  L  ++P+ T RF+GKI G K +Y VA
Sbjct: 326 FLAMKQLVEQQPIHTCRFWGKILGIKRSYLVA 357


>AK223347-1|BAD97067.1|  717|Homo sapiens radial spokehead-like 1
           variant protein.
          Length = 717

 Score = 73.7 bits (173), Expect = 3e-13
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 7   SRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRI 66
           S Y+HLV+++ KIL+Q+P D +   E  +   + E F P  D L D     P++    ++
Sbjct: 216 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRD----DPEMQPTYKM 271

Query: 67  EEMFRLVKSXXXXXXXXXXXXXXXXXXXXNVKPRIADLIDSNYYFKECGFGLPDSECYAV 126
            E     K                       +  + +++++ +YF++ G GL   E + +
Sbjct: 272 AE-----KQKALFTRSGGGTEGEQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRI 326

Query: 127 YIALNMLAIKEPVSTVRFFGKIYGTKENYYVA 158
           ++A+  L  ++P+ T RF+GKI G K +Y VA
Sbjct: 327 FLAMKQLVEQQPIHTCRFWGKILGIKRSYLVA 358


>AL132795-1|CAI20496.1|  469|Homo sapiens protein ( Human DNA
           sequence from clone RP3-412I7 on chromosome
           6q22.1-22.33. ).
          Length = 469

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 9   YDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQLAVVRRIEE 68
           YDHL +++ KIL+++P + VD FE  S  VK   F   FD L +     P   +  + + 
Sbjct: 230 YDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKA 289

Query: 69  MF 70
           +F
Sbjct: 290 LF 291


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,017,333
Number of Sequences: 224733
Number of extensions: 672662
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 9
length of query: 177
length of database: 73,234,838
effective HSP length: 85
effective length of query: 92
effective length of database: 54,132,533
effective search space: 4980193036
effective search space used: 4980193036
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)