GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    27   5.7  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 6   SSRYDHLVDVVQKILSQKPPDVVD 29
           S  YD+LV ++ K+ SQ PPD ++
Sbjct: 208 SKFYDYLVKMIFKLHSQVPPDALE 231


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 6   SSRYDHLVDVVQKILSQKPPDVVD 29
           S  YD+LV ++ K+ SQ PPD ++
Sbjct: 208 SKFYDYLVKMIFKLHSQVPPDALE 231


>Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical
           protein T19C4.5 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 139 VSTVRFFGKIYGTKENYYV 157
           V  V FFG I+G+ EN YV
Sbjct: 7   VCLVLFFGNIFGSSENCYV 25


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,633
Number of Sequences: 27539
Number of extensions: 132394
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 12,573,161
effective HSP length: 77
effective length of query: 100
effective length of database: 10,452,658
effective search space: 1045265800
effective search space used: 1045265800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)