GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000820-TA|BGIBMGA000820-PA|IPR006802|Radial
spokehead-like protein
         (177 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34780.1 68414.m04329 protein disulfide isomerase-related con...    29   1.3  
At5g66210.2 68418.m08341 calcium-dependent protein kinase family...    29   1.8  
At5g66210.1 68418.m08340 calcium-dependent protein kinase family...    29   1.8  
At1g02670.1 68414.m00217 DNA repair protein, putative similar to...    28   3.1  
At4g36070.1 68417.m05135 calcium-dependent protein kinase family...    28   4.1  

>At1g34780.1 68414.m04329 protein disulfide isomerase-related
           contains weak similarity to Pfam:P08003 protein
           disulfide isomerase A4 precursor (Protein ERp-72, ERp72)
           [Mus musculus]
          Length = 310

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 35  SWQVKQEKFRPNFDLLNDVYLSPPQLAV 62
           SW      FRP+FD+++ +Y S P  A+
Sbjct: 91  SWCPFSRSFRPSFDVISSLYSSIPHFAI 118


>At5g66210.2 68418.m08341 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 7   SRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQL 60
           S  D LVD  + + +      ++  +   WQ++       FDL  D Y++P +L
Sbjct: 416 SNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEEL 469


>At5g66210.1 68418.m08340 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 523

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 7   SRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQL 60
           S  D LVD  + + +      ++  +   WQ++       FDL  D Y++P +L
Sbjct: 416 SNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEEL 469


>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
           SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 678

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 102 ADLIDSNYYFKECGFGLPDSECYAV 126
           A+L+D+N   KECGFG   S+ Y V
Sbjct: 450 ANLLDANKNEKECGFGHDPSKDYFV 474


>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 536

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/68 (19%), Positives = 33/68 (48%)

Query: 1   MLAKPSSRYDHLVDVVQKILSQKPPDVVDHFEQYSWQVKQEKFRPNFDLLNDVYLSPPQL 60
           +L    S  D LVD  + +++    + ++  +   WQ +       FD+  D +++P +L
Sbjct: 416 ILQANDSNTDGLVDFTEFVVAALHVNQLEEHDSEKWQQRSRAAFDKFDIDGDGFITPEEL 475

Query: 61  AVVRRIEE 68
            + + +++
Sbjct: 476 RLNQCLQQ 483


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,303
Number of Sequences: 28952
Number of extensions: 123957
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 5
length of query: 177
length of database: 12,070,560
effective HSP length: 77
effective length of query: 100
effective length of database: 9,841,256
effective search space: 984125600
effective search space used: 984125600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)