Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000819-TA|BGIBMGA000819-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (212 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     76   2e-14
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    30   1.6  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 29   2.2  
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)                   28   6.6  
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_23621| Best HMM Match : SURF2 (HMM E-Value=5)                       28   6.6  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.8  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.8  

>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 18/217 (8%)

Query: 2   KKVVIFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHE 61
           KKVV+FG TG  GL+ V+ AL +G  V    R P K+     D + +VKG++ + +S   
Sbjct: 8   KKVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEKMTIK-NDNLVVVKGDIFDIESFSP 66

Query: 62  AVEGTDAVVITLGT--RNDLAPTSDLSEGTKNIIDAMRAKNVKTV-------SACLSAFL 112
           + EG DA++ T GT   +   PT++ SE  K I+  M+   V  +       +       
Sbjct: 67  SFEGKDAILSTFGTAFHSIFNPTTEYSESMKGILQTMKKHGVNRLIVETSWGTEATPGGP 126

Query: 113 FYEQEKVPPIFVN-LNEDHKRMFQAL-KDSGLNWIAAFPPHFTDDPSR-----EMIIEVN 165
           F  +  + P+ +N + +D   M   + K+ G+N+    P   T+DP       E  +  N
Sbjct: 127 FSLEWIIKPLLLNGMLKDMGVMEHMIEKEEGINYTIVRPAGLTNDPPNGKYKIEEGVYCN 186

Query: 166 PEKTPGRTIAKCDLGTFLVDALSEPKYYKAVIGICNV 202
              T  R I + D+   +++ L   +Y K  I I  +
Sbjct: 187 KTGTTHR-IPRADVAACMLNCLDTDQYDKKGIAIATL 222


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 96  MRAKNVKTVSACLSAFLFYEQEKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDD 155
           +  K + T S  L  FL Y    +P ++ +L+ D ++  + L+D   +W  ++     ++
Sbjct: 683 LTCKTLSTYSTSLERFLKYI---IPLLYTSLSADKRKALKKLRDVQPSWRESWGKRIAEE 739

Query: 156 -PSREMIIEVN-PEKTPGRTIAKCDLGTFLVDALSEPKYYK 194
              RE + E N P     +++ + +    +   L+ PK YK
Sbjct: 740 RAEREWVAEKNLPTLEEAKSLLESEHAQKMTKMLTSPKKYK 780


>SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 150 PHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTF 182
           P FT  P     I V P +TPG     CD+  F
Sbjct: 188 PLFTSQPKHVQNILVRPSRTPGPAFYICDINAF 220


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 82  TSDLSEGTKNIIDAMRAKNVKTVSACLSAFL-FYEQEKVPP 121
           T DL EG   I   M  K  + V  C+S  L  Y+  K PP
Sbjct: 146 TVDLDEGLSGIFGGMLDKQAEFVRLCVSRILRLYKGNKTPP 186


>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 126 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTP 170
           + E ++R+ + LKD G+     F P  TD+   E ++EV  E+ P
Sbjct: 250 IQEKNERIKKILKDLGIEE-KVFEPTMTDEEVPERLLEVRDEEVP 293


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 106 ACLSAFLFYEQEKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDD 155
           A LS F  Y+  K+P    N NE    +F AL    L+WI  +P HF  D
Sbjct: 333 AGLSTFYAYKARKIPE---NFNEARGIVF-ALYILILSWIVYYPVHFALD 378


>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
          Length = 114

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2  KKVVIFGSTGVIGLNAVEAALKKGLEVRAF-VRDP 35
          KKVV+ G  G  G     A  +KG EV  F +R+P
Sbjct: 12 KKVVVTGGAGYFGSRLGYALSEKGAEVTLFDIREP 46


>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 38  LPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLG-TRNDLAPTSDLSEGTKNIIDAM 96
           L + L D  E   G + E   VH+AVE       + G  + D+A   +  E  K  ID M
Sbjct: 133 LDQELADANEAYVGKIEEFKEVHKAVEQLRTSGFSTGEIKKDIANMEEEHEQLKKRIDRM 192

Query: 97  RAK 99
           + K
Sbjct: 193 QKK 195


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 34  DPAKLPEHLKDKVEIVKGNVLEPDSV 59
           DPAK    +KD  + ++GN+L PD V
Sbjct: 341 DPAKEQPGIKDNDDDIEGNLLLPDGV 366


>SB_23621| Best HMM Match : SURF2 (HMM E-Value=5)
          Length = 403

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 176 KCDLGTFLVDALSEPKYYKAVIGICNVPKNEG 207
           + + GT  + ALS+PK +     +C +P+ EG
Sbjct: 183 RSEKGTMQITALSDPKRFSDSFNMCLMPEIEG 214


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 53  VLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSA 106
           VL  D+ +   +G   VVI +   ND AP   L+    NI +   A  V  V+A
Sbjct: 177 VLAQDAANRCHKGRTVVVIDVKDENDNAPEFPLNSYVFNIRENTPAAQVAIVTA 230


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 47   EIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIID 94
            EI + +V    + ++ +  T++ VIT+  RND APT   + G  NI +
Sbjct: 1592 EIYRSSVTVTSTDNKGLNVTNSFVITVQDRND-APTKISASGPLNIAE 1638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,058
Number of Sequences: 59808
Number of extensions: 294944
Number of successful extensions: 610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 12
length of query: 212
length of database: 16,821,457
effective HSP length: 79
effective length of query: 133
effective length of database: 12,096,625
effective search space: 1608851125
effective search space used: 1608851125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)