GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000819-TA|BGIBMGA000819-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    27   1.6  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   3.6  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   6.3  

>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 4  VVIFGSTGVIGLNAVEAALKKGLEVRAF-VRDPAKLPEHLKDKVEIVKGNVLEPDSVHEA 62
          +VI G +G++G   ++ AL +G  V +    +PA   ++   K   +K N+ +   V   
Sbjct: 38 IVITGGSGILGHAIIQEALDRGFSVASLDSTEPASFLQY-NSKFSALKCNITKDKDVEGC 96

Query: 63 V 63
          V
Sbjct: 97 V 97


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 39  PEHLKDKVEIVKGNVLEPDSVH-EAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMR 97
           P++++D+ EI KGN L+      E V+G   V+      N   P    +E   N+++  +
Sbjct: 89  PDYMQDESEITKGNTLKTRMFKTEGVKGKCFVICFCPNHNLTLPLMS-AEAICNVVETWK 147


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 2  KKVVIFGSTGVIGLNAVEAALKKGLEV---RAFVRDPAKLPEHLKDKVEIVKGNVLE--P 56
          K +++ GS+  IGL   EA  KK   +   R+   +   L     D    VKG+V E   
Sbjct: 7  KVILLTGSSKGIGLATAEALQKKAKVIAVSRSLTPELETLLIQNPDSFVHVKGDVTEVGK 66

Query: 57 DSVHEAVE---GTDAVVITLGTRNDLAPTSD 84
           S+  A++     D+V++  G    +A  +D
Sbjct: 67 ASIETAIKKFGKLDSVILNAGVLEPIAKIAD 97


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,001,051
Number of Sequences: 5004
Number of extensions: 41105
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 3
length of query: 212
length of database: 2,362,478
effective HSP length: 70
effective length of query: 142
effective length of database: 2,012,198
effective search space: 285732116
effective search space used: 285732116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)