GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000819-TA|BGIBMGA000819-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (212 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    35   0.050
AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   5.8  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   5.8  

>U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical
           protein F13D11.4 protein.
          Length = 343

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 14/131 (10%)

Query: 3   KVVIFGSTGVIGLNAVEAALKKGLEVRAFVRD---PAKL-PEHLKDK---VEIVKGNVLE 55
           KV++ G++G IG + VE  LK G  VR  VRD    AK+ P    DK   +E+V+ ++L+
Sbjct: 7   KVLVTGASGFIGTHCVEILLKNGYRVRGTVRDLNNKAKVQPIKKLDKKNHLELVEADLLD 66

Query: 56  PDSVHEAVEGTDAVVITLG---TRNDLAPTSDLSEGTKNIIDAM----RAKNVKTVSACL 108
                +AV G D V+         +D    +   EGT N++ A+      + +   S+C 
Sbjct: 67  STCWKKAVAGCDYVLHVASPFPIVSDERCITTAVEGTMNVLKAIAEDGNVRKLVLTSSCA 126

Query: 109 SAFLFYEQEKV 119
           +    Y Q++V
Sbjct: 127 AVNEGYTQDRV 137


>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 4   VVIFGSTGVIGLNAVEAALKKGLE-VRAFVRDPAKLPEH--LKDKVEIV--KGNVLEPDS 58
           V +FG++G +GL  V    K G + +  + +DP  + EH  L +  +++     +++ +S
Sbjct: 62  VTVFGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEES 121

Query: 59  VHEAVEGTDAVVITLGTR 76
           + +AV+ ++ V+  +GTR
Sbjct: 122 IRKAVKYSNVVINLIGTR 139


>AF022978-8|AAG24176.1|  279|Caenorhabditis elegans Hypothetical
          protein T01G6.1 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 2  KKVVIFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHE 61
          K V+I GS+  IG        K G +V    R+  KL    K  +++VK     PDSV+ 
Sbjct: 7  KSVIITGSSSGIGRATAVLFAKNGAQVTITGRNAEKLEATKKKLLKVVK----TPDSVNV 62

Query: 62 AVEG-TDA 68
           V   TDA
Sbjct: 63 VVANLTDA 70


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 19  EAALKKGLEVRAFVR-DPAKLPEHLKDKVEIVKGNVLEPDSVHEA 62
           E   K+G  V  + + D   +P HL D  EI K  + + + V+EA
Sbjct: 858 EELFKQGEHVGKYSKFDERGVPTHLADGTEITKSQIKKLEKVYEA 902


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 19  EAALKKGLEVRAFVR-DPAKLPEHLKDKVEIVKGNVLEPDSVHEA 62
           E   K+G  V  + + D   +P HL D  EI K  + + + V+EA
Sbjct: 857 EELFKQGEHVGKYSKFDERGVPTHLADGTEITKSQIKKLEKVYEA 901


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,420,317
Number of Sequences: 27539
Number of extensions: 225874
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 5
length of query: 212
length of database: 12,573,161
effective HSP length: 78
effective length of query: 134
effective length of database: 10,425,119
effective search space: 1396965946
effective search space used: 1396965946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)