GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000819-TA|BGIBMGA000819-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (212 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 26  LEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVH 60
           L    +   P +LP+HL   +   K  V+E   +H
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLH 401


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 78  DLAPTSDLSEGTKNIIDAMRAKNVKT 103
           D+ P     EG+K I +    KNV T
Sbjct: 159 DVIPIRRTGEGSKPIFEREEIKNVLT 184


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,213
Number of Sequences: 429
Number of extensions: 2575
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 212
length of database: 140,377
effective HSP length: 55
effective length of query: 157
effective length of database: 116,782
effective search space: 18334774
effective search space used: 18334774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)