Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000818-TA|BGIBMGA000818-PA|IPR000182|GCN5-related
N-acetyltransferase
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.4  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   3.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   3.3  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   4.4  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   4.4  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 138 YGVRLPSHSYSSAVSIKLDNPV--AINPITQTV 168
           +G  LP+H  SS V+  LDN V  A++P  +T+
Sbjct: 156 HGFSLPTHEQSSPVAESLDNSVSSALSPHLETL 188


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 15 PEYLKACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLL 61
          P+Y     E +N+E+  +ET+ ++ L A   +L T  I+ +  K ++
Sbjct: 18 PDYPPQITEWLNDEFSVNETSTILELGAGSGKL-TPRIIASQPKEII 63


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 95  FLMKRVEEYCKSVLNLKMIHLSTKGQENFYVKLGYKVCAPISIYGVRLPSHSYSSAVSIK 154
           F  KR   +  S  ++   HL+++ QE+F   +G+  C     Y   L +H Y   VS  
Sbjct: 672 FHWKRDSPHMSSTPSISEEHLASEEQEDFVPAVGH--CKLCGKYSNELRAH-YQDCVSST 728

Query: 155 LD 156
           +D
Sbjct: 729 ID 730


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 97  MKRVEEYCKSVL-----NLKMIHLSTKGQENFYVKLGYKVCAPISIYGVRLPSHSYSSAV 151
           +K ++E+ K VL      L  I L  K   +FY +L  K C+    Y V + + S   A+
Sbjct: 758 VKELKEFSKVVLCPKETKLIRIELDIKYATSFYDELNEKWCSEEGEYNVLVGTSSKDIAL 817

Query: 152 SIKLDNPVAIN 162
           + K   P  I+
Sbjct: 818 TGKFTLPKTIH 828


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 50  SLILVANTKSLLGHCKLTAIPSIP 73
           S +++A+T SLL    L+AIP +P
Sbjct: 175 SQLIIADTSSLLNRGILSAIPELP 198


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 97  MKRVEEYCKSVLNLKMIHLSTKGQEN 122
           + R  +YCKS     MIH     +EN
Sbjct: 137 LHRALDYCKSKHGSNMIHFEASAKEN 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 879,002
Number of Sequences: 5004
Number of extensions: 32360
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 2,362,478
effective HSP length: 69
effective length of query: 132
effective length of database: 2,017,202
effective search space: 266270664
effective search space used: 266270664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)