Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000818-TA|BGIBMGA000818-PA|IPR000182|GCN5-related
N-acetyltransferase
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_58915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 4  ENLKVLPLHKHPEYLKACCEMINEEWPRSETARMMSLQASCNELPTSLILV-----ANTK 58
          E    L LH++  + +    +++ EWPRS+ AR  SL  S +  P +++LV      ++ 
Sbjct: 6  EETDFLKLHENVTFAEEVVNLLSSEWPRSKAARYHSLNLSNDNFPCAMVLVRRDPQCHST 65

Query: 59 SLLGHCKLTAIPSIPESCFVE 79
           ++GHC  + +    ++ F+E
Sbjct: 66 EVVGHCVFSKVHGSEDALFIE 86


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 17/38 (44%)

Query: 135 ISIYGVRLPSHSYSSAVSIKLDNPVAINPITQTVPGAF 172
           I +    +P   Y S   I L   V INPIT  VP  F
Sbjct: 196 IMVLNTLIPISLYISVGEISLGKGVWINPITNFVPSRF 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,173,659
Number of Sequences: 59808
Number of extensions: 220940
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)