Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000818-TA|BGIBMGA000818-PA|IPR000182|GCN5-related
N-acetyltransferase
(201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250 33 0.16
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 33 0.16
02_05_0531 + 29811356-29811856 32 0.28
08_02_1195 - 25149891-25151402,25152194-25152493 31 0.84
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 31 0.84
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 29 2.6
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 28 4.5
07_01_1065 + 9427870-9427974,9428069-9428121,9428994-9429173,942... 28 5.9
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 27 7.9
>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
Length = 231
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 78 VETVVISRAMRGKKLGTFLMKRVEEYCKSVLNLKMIHLSTKGQENFYVKLGY 129
VE VV+ A RG+ LG +++R+ E+ + K+I T FY K G+
Sbjct: 103 VEDVVVDAAARGRGLGERVVRRLVEHARGRGCYKVIINCTPELTGFYAKCGF 154
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 16 EYLKACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLLGHCKLTAIPSIP 73
EYLK CCE + EE R + + L+A P + L A T S+ C+ A S P
Sbjct: 239 EYLKRCCETLTEENRRLQ-KELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAP 295
>02_05_0531 + 29811356-29811856
Length = 166
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 78 VETVVISRAMRGKKLGTFLMKRVEEYCKSVLNLKMIHLSTKGQENFYVKLGY 129
VE VV+ A RG+ LG +++R+ E K K+I T +Y K G+
Sbjct: 104 VEDVVVDAAARGRGLGLRVVRRLVEIAKEAGCYKVILDCTPELRAYYAKCGF 155
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 34 TARMMSLQASCNELPTSLILVANTKSLLGHCKLTA 68
T +++SL+ C+EL +L +TK+++ H K +A
Sbjct: 323 TTKLVSLEGYCSELKKALKQATSTKNMISHSKRSA 357
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 16 EYLKACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLLGHCKLTA 68
EYLK CCE + EE R + L+A P + L A T S+ C+ A
Sbjct: 269 EYLKRCCETLTEE-NRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVA 320
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 122 NFYVKLGYKVCAPISIYGVRLPSHSYSSAVSIKLDNPVAINPITQ 166
+F + + VC P S++ L HS +AVS+ L+ I+ +++
Sbjct: 88 DFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETSTIISVMSK 132
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 22 CEMINEEWPRSETARMMSLQASCNELPTSLILVAN 56
C++ + W R E AR + +A C +P L A+
Sbjct: 101 CDVFSGRWVRDEAARPLYREADCPYIPAQLACEAH 135
>07_01_1065 +
9427870-9427974,9428069-9428121,9428994-9429173,
9429252-9429492
Length = 192
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 66 LTAIPSIPESCFVETVVISRAMRGKKLGTFLMKRVEEYCKSVLNLKMIHLSTK---GQEN 122
L + + E +V + + + R +K+GT L+K E + M + K G
Sbjct: 91 LKNLQGVDEYLYVSGIAVLPSFRRRKVGTALLKACEALALQWRHRFMALRAYKDDDGARG 150
Query: 123 FYVKLGYKVCA 133
Y K GY+V A
Sbjct: 151 LYSKAGYRVVA 161
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 93 GTFLMKRVEEYCKSVLNLKMIH-LSTKGQENFYVKLGYKVCAPISI 137
GT LM+ E + K I +S G ++Y KLGY++ P +
Sbjct: 524 GTLLMEEAERIARKEHRSKKIAVISGVGTRHYYRKLGYELEGPYMV 569
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,104,224
Number of Sequences: 37544
Number of extensions: 180329
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 9
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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