Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000817-TA|BGIBMGA000817-PA|IPR001683|Phox-like
         (643 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               33   0.010
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   3.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   3.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   3.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   5.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   5.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   7.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   7.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   7.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   7.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   7.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 0.010
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 237 DDSDDMSSTEDYHKPRIVEGQSSSSMDRSPEERHQRAKYRRKITGDSKSGRRQ 289
           DD DD  S  +  K +     SSSS D  P   HQRA +     GD    R++
Sbjct: 86  DDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRKK 138


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 11  KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTESLMHLLRQCEPD 61
           K++ LE Y    IRE+ + G   S + SPDS   S TS  S   +L    P+
Sbjct: 58  KKMILE-YELRRIREIEKLGSERSKSRSPDSRDKSNTSNTSKTIILSDKGPE 108


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 11  KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTESLMHLLRQCEPD 61
           K++ LE Y    IRE+ + G   S + SPDS   S TS  S   +L    P+
Sbjct: 58  KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKGPE 108


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 11  KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTESLMHLLRQCEPD 61
           K++ LE Y    IRE+ + G   S + SPDS   S TS  S   +L    P+
Sbjct: 58  KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSNKGPE 108


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 11  KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTESLMHLLRQCEPD 61
           K++ LE Y    IRE+ + G   S + SPDS   S TS  S   +L    P+
Sbjct: 58  KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTSKTIILSNKGPE 108


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 359 RSMMVTPIQETPSLTLSESDMQVATDDPGAENGNGVLTDPLLNRLKEQELEASDNVS 415
           R+  + P+ +  ++   +S        P  E      T P+++  KEQ+     N++
Sbjct: 764 RNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNIN 820


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 28  ESGKIESSTPSPDSPASETSTES 50
           +SG IES T  PD PAS +++ +
Sbjct: 579 DSG-IESGTEKPDKPASSSASSA 600


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 133 SQASPTEGVKRSKSELVLRRTP 154
           S A+ T+G K    E+ L RTP
Sbjct: 329 SNATDTDGTKERTEEVALDRTP 350


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 282 DSKSGRRQVTEAEALRAMQRLCSRIASQKMLVISSLENDCSKEELNRQIAVLQELQKKY 340
           D +  RRQ+  A        +  R+ S   LV+      CS EE  +   VL  +Q+ Y
Sbjct: 44  DQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTY 102


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 282 DSKSGRRQVTEAEALRAMQRLCSRIASQKMLVISSLENDCSKEELNRQIAVLQELQKKY 340
           D +  RRQ+  A        +  R+ S   LV+      CS EE  +   VL  +Q+ Y
Sbjct: 44  DQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTY 102


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
          determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTES 50
          K++ LE Y    IRE+ + G   S + SPDS   S TS  S
Sbjct: 58 KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTS 97


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
          determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTES 50
          K++ LE Y    IRE+ + G   S + SPDS   S TS  S
Sbjct: 58 KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTS 97


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
          determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTES 50
          K++ LE Y    IRE+ + G   S + SPDS   S TS  S
Sbjct: 58 KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSSTSNTS 97


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
          determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTES 50
          K++ LE Y    IRE+ + G   S + SPDS   S TS  S
Sbjct: 58 KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTS 97


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
          determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 11 KRIELEDYAKNIIRELVESGKIESSTPSPDS-PASETSTES 50
          K++ LE Y    IRE+ + G   S + SPDS   S TS  S
Sbjct: 58 KKMILE-YELRRIREIEKLGSERSKSRSPDSRDRSNTSNTS 97


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 15  LEDYAKNIIRELVESGKIESSTPSPDSPASETSTESLMHLLRQCEPDTATSIK---DTVD 71
           ++ +  + +  L ES  I    P      + +   SL H L + +P+T   +K   D VD
Sbjct: 224 IDGFRIDAVPHLFESANISLDEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDFVD 283

Query: 72  RHKRE 76
            +  E
Sbjct: 284 NYAEE 288


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,523
Number of Sequences: 429
Number of extensions: 5064
Number of successful extensions: 42
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 18
length of query: 643
length of database: 140,377
effective HSP length: 62
effective length of query: 581
effective length of database: 113,779
effective search space: 66105599
effective search space used: 66105599
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)