Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000817-TA|BGIBMGA000817-PA|IPR001683|Phox-like
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 36 0.023
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 33 0.16
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 31 0.37
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 31 0.65
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 30 0.86
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 30 0.86
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 29 2.0
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 3.5
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 28 3.5
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 27 8.0
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 35.5 bits (78), Expect = 0.023
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 284 KSGRRQVTEAEALRAMQRLCSRIAS--QKMLVISSLENDC--SKEELNRQIAVLQELQKK 339
K R+ AEA+ +Q RI +K V+ +N+ S EE++ EL K
Sbjct: 106 KEKNRRDEVAEAILGLQHEIVRINEIMEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKV 165
Query: 340 YVRLEMALQYSFFDSPQNRRSMMVTPIQETPSLTLSESDMQVATDDPGAENGNGVLT 396
+++E L ++P TP +E P T+SE D P + N V T
Sbjct: 166 ILKVERELHTLRQNTPSQNEQAEATPSKEIPRETVSEK-----ADHPPSSNTKSVST 217
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 32.7 bits (71), Expect = 0.16
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 244 STEDYHKPRIVEGQSSSSMDR--SPEERHQRAKYRRKITGDSKSGRRQVTEAEALRAMQR 301
S + H+ + + + S+D SP + H+ K D K+ R + A +A++
Sbjct: 124 SNPEKHEDAVSQNRLRGSLDTVSSPSKTHKANK-------DEKATRLHLIIANLKKALKE 176
Query: 302 LCSRIASQKMLVISSLENDCSK-------EELNRQIAVLQELQKKYVRLEMALQYSFFDS 354
+ + + + V SS E++ + EE N ++ LQ L+ K + L+
Sbjct: 177 KDAEVLNLQSHV-SSKESELDRFKIKLETEESNWKVR-LQVLESKLATQDRKLRMQ--KK 232
Query: 355 PQNRRSMMVTPIQETPSLTLSESDMQVATDDPGAENGNGVLTDPLLNRLKEQELEASDNV 414
R+S++V+P +P L + T P A +G+ + P L + + S +
Sbjct: 233 STERKSLLVSPRVSSPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQK-TSTSIGLSSSP 291
Query: 415 STSNDELPAEQPDAWD 430
S+ + QP + D
Sbjct: 292 PQSSPSAQSSQPFSRD 307
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 279 ITGDSKSGRRQVTE-AEALRAMQRLCS-------RIASQKMLVISSLENDCSKEELNRQI 330
+T SK +Q+T+ + LR + + CS ++ S+ +S +EN SK E
Sbjct: 143 VTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYS 202
Query: 331 AVLQELQKKYVRLEM 345
+L+E K+Y+ LE+
Sbjct: 203 KILREADKRYLNLEV 217
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 30.7 bits (66), Expect = 0.65
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 148 LVLRRTPREEVLDPLSADERDEFRDKRINLSLSLDPLACPDSLNAEEY 195
L LR+ +E+++P+SADE E + +N S+ L L + L + Y
Sbjct: 524 LYLRKDKLDELMNPVSADEIPEHLKEALNPSIQLAELRRKERLESHLY 571
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 66 IKDTVDRHKRELVELEEELQSRVRSVSNQRVK 97
+KD +R K+EL+E E++ + R+R + Q+ K
Sbjct: 130 LKDEEERRKKELMEKEKKEKERIRLIEEQKHK 161
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 30.3 bits (65), Expect = 0.86
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 240 DDMSSTEDYHKPRIVEGQSSSSMDRSPEERHQRAKYRRKITGDSKSGRRQVTEAEALRAM 299
D++S + DY K VE + +D+ +ER ++ + R+K G ++E E + +
Sbjct: 531 DNLSKSSDYSKNE-VEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVGLSEEEIIAYV 589
Query: 300 QRLCSRIASQKMLVIS 315
L +++M+ +S
Sbjct: 590 TMLSQEEEAKRMVQLS 605
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 390 NGNGVLTDPLLNRLKEQE--LEASDNVSTSNDELP-AEQPDAWDDPLRRALE 438
NG L P + RL+E L D + + D + +E D+WD+PLR +E
Sbjct: 148 NGPERLHYPSVKRLREAYSLLVYGDGLQQALDRISVSEDVDSWDEPLRSVIE 199
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 305 RIASQKMLVISSLENDCSKEELNRQIAVLQELQKKYVRLEMALQ-------YSFFDSPQN 357
R+A SSLE C KE + A + + K ++++ LQ + S ++
Sbjct: 64 RMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFTRYAASLKD 123
Query: 358 RRSMMVTPIQETPSLTLSESDMQVATDD 385
++ M+V+ I++ LS+ V D
Sbjct: 124 KKKMIVSGIEKVHKDKLSKHQALVKAQD 151
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 3 ELRSRIENKRIELEDYAKN---IIRELV--ESG--KIESSTPSPDSPASETSTESLMHLL 55
ELR+R E +E E+Y +N + E+ E+G KI+ T P P+ LL
Sbjct: 501 ELRTRGEGATVETENYVENGKLVTSEMPQHENGPFKIKIQTKKPAVPSERREFGLPERLL 560
Query: 56 RQCEPDTATSIKDTVDRHKRELVELEEELQSRVRSV 91
+ E + + K + E + E R+RS+
Sbjct: 561 LEEEDEEPQGYSPNPQKPKPAMEENDAEKTKRLRSL 596
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 394 VLTDPLLNRLKEQELEASDNVSTSNDELPAEQPDAWDD 431
V++ P + LKE +S+ + S DE+P ++ +W D
Sbjct: 123 VVSFPHITFLKESGNSSSNEIYDSIDEIPPQEIQSWVD 160
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,029
Number of Sequences: 5004
Number of extensions: 81152
Number of successful extensions: 328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 12
length of query: 643
length of database: 2,362,478
effective HSP length: 77
effective length of query: 566
effective length of database: 1,977,170
effective search space: 1119078220
effective search space used: 1119078220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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