GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000817-TA|BGIBMGA000817-PA|IPR001683|Phox-like
         (643 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    27   1.5  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    27   1.5  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    26   2.7  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   6.2  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 37  PSPDSPASETSTESLMHLLRQC 58
           PSP+ PA   S ES+ H+L  C
Sbjct: 943 PSPECPACTGSVESVAHVLFYC 964


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 37  PSPDSPASETSTESLMHLLRQC 58
           PSPD P    S ES+ H++ +C
Sbjct: 948 PSPDCPRCAGSVESVAHVMFEC 969


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 37  PSPDSPASETSTESLMHLLRQCE 59
           PS + P    S ES+ H+L QCE
Sbjct: 946 PSAECPRCPGSVESVAHVLFQCE 968


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 238 DSDDMSSTEDYHKPRIVEGQSSSSMDRSPEERHQRAKYRRKITGDSKSGRRQ 289
           D DD   TE  ++      +  SS       RH+ +K+ R  + D    RR+
Sbjct: 608 DRDDYRRTEKDYRGNGKHDKYGSSRHSDSSSRHRSSKHERDRSRDRDRDRRR 659


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,735
Number of Sequences: 2123
Number of extensions: 17558
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 5
length of query: 643
length of database: 516,269
effective HSP length: 68
effective length of query: 575
effective length of database: 371,905
effective search space: 213845375
effective search space used: 213845375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)