Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000817-TA|BGIBMGA000817-PA|IPR001683|Phox-like
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 40 0.007
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 35 0.14
At3g61320.1 68416.m06862 expressed protein contains Pfam PF05249... 35 0.14
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 34 0.25
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 33 0.58
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 32 1.0
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 32 1.3
At1g68790.1 68414.m07863 expressed protein 31 3.1
At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containi... 31 3.1
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 30 4.1
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 30 4.1
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 30 5.4
At4g01540.1 68417.m00200 no apical meristem (NAM) family protein... 30 5.4
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 29 7.2
At5g51600.1 68418.m06397 microtubule associated protein (MAP65/A... 29 7.2
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 9.5
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 39.5 bits (88), Expect = 0.007
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 347 LQYSFFDSPQNRRSMMVTPIQETPSLTLSESDMQVATDDPGAENGNGVLTDPLLNRLKEQ 406
L F +P+ R V Q+ P L++ + G+ENG+GV D +
Sbjct: 4 LSPGFAINPRFRSDSFVNS-QKPPFLSVQIGSQRRNLSRIGSENGDGVAFDAVAYEADRL 62
Query: 407 ELEAS---DNVSTSNDEL---PAEQPDAWDDPLRRALEPDAPARNGAVAPTLVH 454
L+A+ D T+ EL P P AW +R+ + ARN A++P VH
Sbjct: 63 SLDAAAMEDMAETAKKELESDPDSDPKAWKWVIRKKMWDLMEARNYAMSPRPVH 116
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 35.1 bits (77), Expect = 0.14
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 281 GDSKSGRRQVTEAEALRAMQRLCSRIASQKMLVISSLENDCSKEELNRQIAVLQELQKKY 340
GD KS ++Q + A ++ L S + S LVIS+L+ S +E N + E+
Sbjct: 359 GDIKSKKKQAENSLAYHMIRALESSLVS---LVISNLQKPKSLDEKNNPLLFSSEMDSSV 415
Query: 341 VRLEMALQYSF 351
+E L YSF
Sbjct: 416 EAVEKILNYSF 426
>At3g61320.1 68416.m06862 expressed protein contains Pfam PF05249:
Uncharacterised protein family (UPF0187)
Length = 410
Score = 35.1 bits (77), Expect = 0.14
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 34 SSTPSPDSPASETSTESLMHLLRQCEPDTATSIKDTVDRHKRELVELEEELQSR 87
SS P + ET T+ L+HLLR PD A IK+ + KR L E+ ++ R
Sbjct: 42 SSGPESNDSGHETLTDKLIHLLR-AVPDWADEIKERGMQQKRSLYTHEKWVEHR 94
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 34.3 bits (75), Expect = 0.25
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 20 KNIIRELVESGKIESSTPSPDSPASETSTESLMHLLRQCEPDTATSIKDTVDRHKRELVE 79
+ +R+ VE K + +TP S A ETST L R+ A + ++ + RE E
Sbjct: 157 RKYVRKKVEVSKDQDATPVESSAAVETSTRP-KRLCRRVLDFEAENGENQTNGDIREAGE 215
Query: 80 LEEELQSRVRSVSNQRVK 97
+E LQ + NQ +K
Sbjct: 216 MESALQEKQLDSGNQELK 233
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 33.1 bits (72), Expect = 0.58
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 350 SFFDSPQNRRSMMVTPIQETPSL--TLSESDMQVATDDPGAENGNGVLTDPLLNRLKE-Q 406
S +S N + P+ ++PS TLS+ + + T+ G+E G+ ++ + + + E Q
Sbjct: 82 SLSNSSSNDKEKKTLPLFQSPSSRRTLSDESLALCTESLGSETGSDIIHEDMFSISSELQ 141
Query: 407 ELEASDNVSTSN 418
+E +TSN
Sbjct: 142 TMETRTTSTTSN 153
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 32.3 bits (70), Expect = 1.0
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 3 ELRSRIENKRIELEDYAKNIIRELVESGKIESSTPSPDSPASETSTESLMHLLRQCEPDT 62
EL IENKR ELE+ +++ + + K+E +E E + L++ + +
Sbjct: 654 ELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAE- 712
Query: 63 ATSIKDTVDRHKRELVELE---EELQSRVRSVSNQR 95
IK +R +RE EL+ EEL+ + + QR
Sbjct: 713 RLEIKLDRERREREWAELKDSVEELKVQREKLETQR 748
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 368 ETPSLTLSESDMQVATDDPGAENGNGVLTDPLLNRLKEQE 407
E+ LTL S+M+ T GA+NG+ D LL+ KE+E
Sbjct: 2 ESVELTLKNSNMKDKTLTGGAQNGDDFSVDDLLDFSKEEE 41
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 30.7 bits (66), Expect = 3.1
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 236 PDDSDDMSSTEDYHKP----------RIVEGQSSSSMDRSPEERHQRAKYRRKITGDSKS 285
PDDS D S ED H+P RI EG S ++ +R + R + G S
Sbjct: 810 PDDSLDRVSGED-HEPSATEQSFTDSRIQEGPEGSLQSEMKSDKPRRGRGRGRGRGKSVR 868
Query: 286 GRRQVTEA 293
GR Q T+A
Sbjct: 869 GRSQATKA 876
>At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 323
Score = 30.7 bits (66), Expect = 3.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 268 ERHQRAKYRRKITGDSK-SGRRQVTEAEALRAMQR--LCSRIASQKMLVISSLENDCSKE 324
E H+R +T + G QV + +A + + + S +A + S L + CSK+
Sbjct: 241 EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKK 300
Query: 325 ELNRQIAVLQELQK 338
EL + A+L++LQK
Sbjct: 301 ELRKAFAILEDLQK 314
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 30.3 bits (65), Expect = 4.1
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 6/161 (3%)
Query: 237 DDSDDMSSTEDYHKPRIV---EGQSSSSMDRSPEERHQRAKYRRKIT-GDSKSGRRQVTE 292
D+ + + S+E+ K + E +SSS D S EE+ +R K + G+ K + E
Sbjct: 298 DEKEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKRE 357
Query: 293 AEALRAMQRLCSRIASQKMLVISSLENDCSKEELNRQIAVLQELQKKYVRLEMALQYSFF 352
E + + K SS + + +E + Q+ E + S
Sbjct: 358 KEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNENKETEKKSSES 417
Query: 353 DSPQNRRS-MMVTPIQETPSLTLSESDMQVATDDPGAENGN 392
+N S + ++ T S + D Q TD+ E+GN
Sbjct: 418 QRKENTNSEKKIEQVESTDSSNTQKGDEQ-KTDESKRESGN 457
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 30.3 bits (65), Expect = 4.1
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 4 LRSRIENKRIELEDYAKNIIRELVESGKIESSTPSPDSPASETSTESLMHLLRQCEPDTA 63
L IE +R +LE+Y + + E+ K+E+ S S E S E L E
Sbjct: 341 LEKTIEAQRTDLEEYGRQVCIAKEEASKLENLVESIKSEL-EISQEEKTRALDN-EKAAT 398
Query: 64 TSIKDTVDRHKRELVELE 81
++I++ +D+ +ELE
Sbjct: 399 SNIQNLLDQRTELSIELE 416
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 29.9 bits (64), Expect = 5.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 15 LEDYAKNIIRELVESGKIESSTPSPDSPASETSTESLMHLLRQCEPDTATSIKDTVDRHK 74
+EDY I+E +SG ++ + E E H ++ EP A + K+
Sbjct: 310 MEDY----IKEAPQSGSVQKKLEYQEKEEEEQEEEEAEHSVQPEEPAEADNQKEN-SEGD 364
Query: 75 RELVELEEELQSRV 88
+ L+E EEE Q ++
Sbjct: 365 QPLIEEEEEDQEKI 378
>At4g01540.1 68417.m00200 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 423
Score = 29.9 bits (64), Expect = 5.4
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 330 IAVLQELQKKYVRLEMALQYSFFDSPQNRRSMMVTPIQETPSLTLSESDMQVATDDPGAE 389
I L ++KYV ++ + + +V+ ++T E + ++ + PG E
Sbjct: 136 ITCLPHHKRKYVVCQVKYKGEAAEISYEPSPSLVSDSHTVIAIT-GEPEPELQVEQPGKE 194
Query: 390 NGNGVLTDPLLNRLKEQELEASDNVSTSNDE 420
N G+ D L+ + +QE +++ ++DE
Sbjct: 195 NLLGMSVDDLIEPMNQQEEPQGPHLAPNDDE 225
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 29.5 bits (63), Expect = 7.2
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 237 DDSDDMSSTEDYHKPRIVEGQSSSSMDRSPEERHQRAKYRRKITGDSKSGRRQVTEAEAL 296
DD D+ + E+ KP + Q ++ +E+ ++K ++ D KS V E
Sbjct: 590 DDDDEAEAIEETEKPSVPVRQPKERKEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKP 649
Query: 297 RAMQR 301
R ++
Sbjct: 650 RKQKK 654
>At5g51600.1 68418.m06397 microtubule associated protein
(MAP65/ASE1) family protein low similarity to SP|P50275
Anaphase spindle elongation protein {Saccharomyces
cerevisiae}, protein regulating cytokinesis 1 (PRC1)
[Homo sapiens] GI:2865521; contains Pfam profile
PF03999: Microtubule associated protein (MAP65/ASE1
family)
Length = 707
Score = 29.5 bits (63), Expect = 7.2
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 268 ERHQRAKYRRKITGDSKSG---RRQVTEAEALRAMQRLCSRIASQKMLVISSLENDCS-K 323
ER YRRK+ ++ R+ + +AEA A +CS + + + + S ++ S K
Sbjct: 45 ERECLEVYRRKVDQANRCRAQLRQAIADAEAQLAA--ICSAMGERPVHIRQSDQSVGSLK 102
Query: 324 EELNRQIAVLQELQKKYV 341
+EL R + L+E+QK+ V
Sbjct: 103 QELGRILPELEEMQKRKV 120
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 9.5
Identities = 30/151 (19%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 234 PVPDDSDDMSSTEDYHKPRIVEGQSSSSMDRSPEERHQRAKYRRKITGD--SKSGRRQVT 291
P+PDD +++ E K + + ++R + + + K+ G+ G ++
Sbjct: 103 PLPDDDNNLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKE-Q 161
Query: 292 EAEALRAMQRLCSRIASQKML--VISSLENDCSK--EELNRQIAVLQELQKKYVRLEMAL 347
E++ + ++L + ML I+SL+ + K EEL++ V +EL+ +++
Sbjct: 162 ESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQ 221
Query: 348 QYSFFDSPQNRRSMMVTPIQETPSLTLSESD 378
+ D+ Q + +++ Q SL + E +
Sbjct: 222 RQIQLDANQTKGQLLLLK-QHVSSLQMKEEE 251
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,007
Number of Sequences: 28952
Number of extensions: 433828
Number of successful extensions: 1326
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 19
length of query: 643
length of database: 12,070,560
effective HSP length: 86
effective length of query: 557
effective length of database: 9,580,688
effective search space: 5336443216
effective search space used: 5336443216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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