Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000816-TA|BGIBMGA000816-PA|IPR001752|Kinesin, motor
region, IPR000253|Forkhead-associated, IPR008984|SMAD/FHA,
IPR001220|Legume lectin, beta domain
         (728 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   5.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   5.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   5.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   7.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   7.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 183 DLSKHLVSDYDDIQECMHRGNLHRTTASTQMNDVSSRSHAIFTITFV 229
           D   HL +       CM   +LHR        D   R H +  ++ V
Sbjct: 141 DSGYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSV 187


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 183 DLSKHLVSDYDDIQECMHRGNLHRTTASTQMNDVSSRSHAIFTITFV 229
           D   HL +       CM   +LHR        D   R H +  ++ V
Sbjct: 141 DSGYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSV 187


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/47 (25%), Positives = 17/47 (36%)

Query: 183 DLSKHLVSDYDDIQECMHRGNLHRTTASTQMNDVSSRSHAIFTITFV 229
           D   HL +       CM   +LHR        D   R H +  ++ V
Sbjct: 141 DSGYHLGASSTPTNSCMEYQHLHRYKEEALQGDGRMRQHVMHNLSSV 187


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 102 GQTGSGKTFTMMGSPECQGLIPRICRQLFSRVAAGKESGA 141
           G   SGK + +     C G   R  R+    V   K+ G+
Sbjct: 42  GDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGS 81


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 102 GQTGSGKTFTMMGSPECQGLIPRICRQLFSRVAAGKESGA 141
           G   SGK + +     C G   R  R+    V   K+ G+
Sbjct: 42  GDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGS 81


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,106
Number of Sequences: 317
Number of extensions: 5909
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 728
length of database: 114,650
effective HSP length: 62
effective length of query: 666
effective length of database: 94,996
effective search space: 63267336
effective search space used: 63267336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)