GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000815-TA|BGIBMGA000815-PA|IPR001965|Zinc finger,
PHD-type, IPR001487|Bromodomain, IPR011011|Zinc finger, FYVE/PHD-type
         (332 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.1  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   7.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   7.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 29  LYSEEDVEEPPNRQVLSLNILKY 51
           L++EEDV + P    LSL+  KY
Sbjct: 318 LFTEEDVADVPINVTLSLDEKKY 340


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 11  CDQCKPKEHKRSPRKKRKLYSEEDVEEPP 39
           CD+C+ +  +R      K   EE+ E  P
Sbjct: 249 CDKCRGRFRRRHHLVHHKCGGEEEAERAP 277


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 193 DAVQQLLRDVIKHKDSW 209
           + V++++R +IK+K SW
Sbjct: 80  EGVRKVIRHLIKNKPSW 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 106  WLCAACLAPTRESEDSDYNT-TLVK 129
            WL +A ++P+R   D+ Y+  TL K
Sbjct: 1981 WLLSAAVSPSRRVVDAGYDVPTLSK 2005



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 202 VIKHKDSWPFYEPVSIEDVPDYLD 225
           V+ +  +W FY     + VP+++D
Sbjct: 639 VVCYMTNWAFYRKAEGKFVPEHID 662


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 299 SFSKRKEAESQEHSAGPSSDDEDDLPI 325
           S   +KE E  EH      DD++++ +
Sbjct: 18  SLLSKKEDEEVEHRLSDRDDDDENITV 44


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 308 SQEHSAGPSSDDEDDL 323
           S  HS+ PSSD   DL
Sbjct: 61  SDFHSSSPSSDTSQDL 76


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 114 PTRESEDSDYNTTLVKLKKRKQRHSNDA 141
           P R  +++DY + L +L  R+   + DA
Sbjct: 251 PARNPKEADYPSPLYELVDRRNDENIDA 278


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 302 KRKEAESQEHSAGPSSDDEDD 322
           K ++ + +EH +    DD+DD
Sbjct: 275 KYEKIDKEEHESMDDDDDDDD 295


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 258 IFHNCYTYNTDTHPVAKAGGRLEK 281
           +F+ C+   +  H V+KAG  + K
Sbjct: 646 VFYICHVCCSTIHEVSKAGELIHK 669


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 27  RKLYSEEDVEEPPNRQ 42
           RK  +++ V +PPNR+
Sbjct: 249 RKRSNDDSVSQPPNRK 264


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,051
Number of Sequences: 317
Number of extensions: 3004
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 332
length of database: 114,650
effective HSP length: 57
effective length of query: 275
effective length of database: 96,581
effective search space: 26559775
effective search space used: 26559775
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)