Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000815-TA|BGIBMGA000815-PA|IPR001965|Zinc finger,
PHD-type, IPR001487|Bromodomain, IPR011011|Zinc finger, FYVE/PHD-type
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 97 3e-21
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 86 6e-18
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 73 6e-14
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 71 2e-13
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 55 2e-08
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 53 5e-08
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 46 8e-06
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 42 9e-05
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 40 4e-04
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 31 0.23
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 30 0.53
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 29 0.92
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 29 1.2
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 28 2.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 3.7
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 27 3.7
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 27 4.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 4.9
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 4.9
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 26 6.5
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 8.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.6
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 97.1 bits (231), Expect = 3e-21
Identities = 45/103 (43%), Positives = 61/103 (59%)
Query: 195 VQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIAD 254
++ L ++ H SWPF +PVS EDVPDY +VI+ PMDL+T++ +L +QY S EE I D
Sbjct: 352 LEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRD 411
Query: 255 IALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPSLPE 297
IF NC +YN K RLEKF K+ E + L +
Sbjct: 412 AKYIFDNCRSYNDSNTTYYKNADRLEKFFQKKLRETEYSHLAD 454
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 86.2 bits (204), Expect = 6e-18
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 208 SWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTY 265
++PFY+PV D PDY DVI +PMDL+TI+ KL K++YS+ EE +DI L+F+NC+TY
Sbjct: 276 AFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTY 335
Query: 266 NTDTHPVAKAGGRLEKFVNKRCAELDLPSLPELSFSKRKEAES 308
N PV G +LE ++ P + + K++EAE+
Sbjct: 336 NPPGTPVHVMGRQLENVFKEKWEA--RPKFDDATLVKQQEAET 376
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 198 LLRDVIKHKDSWPFYEPVSI--EDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
++R + + K+S PF PV +++PDY ++ PMDL TI++KL +YS +E I D+
Sbjct: 96 IVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDM 155
Query: 256 ALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAEL---DLPSLPELSFSKRKEAES 308
L+F NC+ YN PV G L++ ++ +L + P+ + SK+K A +
Sbjct: 156 NLMFSNCFLYNGTESPVGSMGKALQEVFERQLKQLPDAEQPAAAPVKKSKQKSAST 211
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 72.9 bits (171), Expect = 6e-14
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 167 MSNGKDRRSKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDV 226
+S+ K +SK + + +E + V LR +H S F VS D PDY V
Sbjct: 282 LSDVKKNKSKWANDQRIGQEELYEAAEKVVLELRSYTEH--SLAFLTKVSKRDAPDYYTV 339
Query: 227 IDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNT-DTHPVAKAGGRLEKFVNK 285
I +PMDL TI L+ Y+S +E + D+ LI+ NC+ YN+ HP+ +F+
Sbjct: 340 IKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYNSHPDHPLRVHA----QFMKD 395
Query: 286 RCAELDLPSLPELSFSKRKEAESQEHSAGPSSDDEDDLPIAKRKKHK 332
+ EL + +P++ RK+ + A SD+E +K K
Sbjct: 396 KSLEL-INLIPDIVIQSRKDYDDSLIEAELESDEESTAETSKHVTSK 441
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 71.3 bits (167), Expect = 2e-13
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 184 HEERAARGPDAVQQLLRDVIKHKD---SWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKE 238
H + A Q +L++++K + ++PFY+PV+ PDY VI PMDL T++
Sbjct: 386 HRRKDAAEMKFCQSVLKELLKKQHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQN 445
Query: 239 KLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLEKFVNK 285
KL ++Y+S + AD+ L+F NCY +N+ PV G +LE K
Sbjct: 446 KLNHNEYASMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESIFQK 492
Score = 69.3 bits (162), Expect = 7e-13
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 195 VQQLLRDVIKHKDSWPFYEPVSI--EDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELI 252
+ +LR + + +DS PF PV +++PDY +I P+DL T+++K YSS + I
Sbjct: 238 IHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFI 297
Query: 253 ADIALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPSLPELSFSK 302
D+ L+F NC+ YN PV G L+ ++ + LPS S+S+
Sbjct: 298 DDMNLMFSNCFLYNGTESPVGVMGKNLQATFERQLKQ--LPSAYVTSYSR 345
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 54.8 bits (126), Expect = 2e-08
Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 176 KNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTT 235
K + + ++ + A+ +L ++ H+ PF PV+ ++ PDY ++ +P DL T
Sbjct: 175 KRAALSNEEKQSLKKFQSAMLPMLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRT 234
Query: 236 IKEKLEKSQYSSDEELIADIALIFHNCYTYN 266
+K +++ + +EL ++ IF NC YN
Sbjct: 235 LKNMIKEGNITEVDELYREVLRIFANCKMYN 265
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 53.2 bits (122), Expect = 5e-08
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 211 FYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTH 270
F P + + PDY +I +P+ L IK ++ +Y ELIAD L+F+N YTYN + H
Sbjct: 1544 FLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYN-EEH 1602
Query: 271 PVAKAGGRLEKFVNKRCAELDLPSLPELSFSKRKEAESQEHSAGPSSDDEDDLPI 325
+ +L + K E DL L + + ++ S + E +LP+
Sbjct: 1603 SIVYEDAKLMEKTLKEVIE-DLEKNNSLHAYEEEALNEEQASLVFLENSEAELPL 1656
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 46.0 bits (104), Expect = 8e-06
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 221 PDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLE 280
P+Y I+QPM L I++KL K +Y + E+ + D L+F N ++N + V + L+
Sbjct: 247 PEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPSSQVYRDADFLK 306
Query: 281 KFV 283
++
Sbjct: 307 NYL 309
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 229 QPMDLTTIKEKLEKSQYSSDEELIADIALIFHN 261
+P L +I+ K+++ QY E ++D+A +F N
Sbjct: 57 RPTTLKSIQSKIDEFQYHDFSEFVSDLAYLFIN 89
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 42.3 bits (95), Expect = 9e-05
Identities = 22/96 (22%), Positives = 43/96 (44%)
Query: 221 PDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLE 280
PDY ++I PM + ++++ +K +Y++ E + D+ +F N TYN V + +L
Sbjct: 180 PDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYNAPGSFVYEDAEKLS 239
Query: 281 KFVNKRCAELDLPSLPELSFSKRKEAESQEHSAGPS 316
+ + + + + E E S PS
Sbjct: 240 QLSSSLISSFSEQPKEHSPATSKHEPEETPASPTPS 275
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 211 FYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTH 270
F E S + PDY +I P+ L I++ + + Y + E + +D+ +F+N TYN +
Sbjct: 1092 FLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEGS 1151
Query: 271 PVAKAGGRLEKFVNKRCAELD 291
V + +++ + + EL+
Sbjct: 1152 FVYEDANKMQTAMETKIEELE 1172
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 2 QKVPEGDWFCDQCKPKEHKRSPRKKRKLYSE 32
+ +PEG WFC C K H P+ ++S+
Sbjct: 151 ENIPEGSWFCVTCSIKSH-HPPKHPLSIWSQ 180
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 29.9 bits (64), Expect = 0.53
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1 MQKVPEGDWFCDQCKPKEHKRSPRK 25
+ +P+ DW+CD CK PRK
Sbjct: 302 LTSIPKEDWYCDACKFNISDYDPRK 326
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 29.1 bits (62), Expect = 0.92
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 221 PDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLE 280
P D ++ D+T K E ++ SS +EL + + + + D + +
Sbjct: 229 PSNEDNVEDKKDITNDSSK-ETAEKSSSDELFSAVVGLQEE--EDDEDAVHLFEIKHSSV 285
Query: 281 KFVNKRCAELDLPSLPELSF 300
+ + KRCAE+D P L E F
Sbjct: 286 ETIKKRCAEIDYPLLEEYDF 305
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 290 LDLPSLPELSFSKRKEAESQEHSAGPSSDDEDDLPIAKRKKHK 332
L LPS LS + +E+ + GP SD+ED+ P+ K+ + K
Sbjct: 3 LPLPSF--LSSNNYNSSETSLLTEGPESDEEDEGPLLKQYRLK 43
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 4 VPEGDWFCDQCKPKEHK 20
VPEG WFC +C H+
Sbjct: 231 VPEGQWFCKKCLLAPHE 247
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 5 PEGDWFCDQCKPKEHKRSP 23
P G+WFCD C + K++P
Sbjct: 276 PNGEWFCDDC-IRRKKQAP 293
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 212 YEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHP 271
YE +ED+ ++D ++ +D+ + + K + +EL+ DI H+ T+
Sbjct: 80 YEWDYLEDLERHVDDCNKRIDIAEARREKTKEEEERIDELMRDIIHTDHSIEVIITEMEA 139
Query: 272 VAK 274
+AK
Sbjct: 140 LAK 142
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 212 YEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSD 248
YE + E+V DY + I P ++ +K+ Y SD
Sbjct: 85 YETMEAENVEDYTEAIKIPDEIVKQIKKVASDHYLSD 121
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 4.9
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 201 DVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTT--IKEKLE------KSQYSSDEELI 252
D +K KDS P + +P+ D P DLT+ +K KL+ ++ +S+E
Sbjct: 266 DSLKSKDSKPLTMSEVLTQLPEDDIPFDDPFDLTSQYVKVKLKMLRLQIANKKNSEEFST 325
Query: 253 ADIAL-IFHNCYTYNTDTHPVAKAGGRLEKFVNK-RCAELDLPSLPELSFSKRKEAESQE 310
++ L + Y +++ + R+E F+NK + + L + + K+ +
Sbjct: 326 LNLQLESITSQYLFSSKEAEIVFRKSRIE-FMNKLKALQQKLENERIVEEIKKNGIQEDS 384
Query: 311 HSAGPSSDDEDD 322
S SS D+D+
Sbjct: 385 QSTDDSSKDDDN 396
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 293 PSLPELSFSKRKEAESQEHSAGPSSDDEDDLPIAKRKK 330
P+L EL S RK ++E ++ DE+ LP K++K
Sbjct: 255 PNLKELIASSRK-VVTKETASSKRKSDEESLPSQKKQK 291
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 231 MDLTTIKEK---LEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKA-GGRLEKFVNKR 286
+DL I E+ L +S ++E+ +L+ HN YT + HP + +L +F
Sbjct: 670 LDLRKINEEFSELLESLIRFEDEIREWKSLMMHNSYTVSVKKHPELEGYNAKLARFERSF 729
Query: 287 CAELDLP 293
E LP
Sbjct: 730 LDEAGLP 736
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 199 LRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALI 258
L DV+K K S P +P + +D D P K +S Y S ++ +
Sbjct: 203 LDDVLKGKGSTPNQKPSLSNLHENNIDQSDSPQHCYCCGNKFNESYYQSQTAQKYNVCI- 261
Query: 259 FHNCYTYNTDTHPVAKAGGRLEKFVNK 285
+CY N P A + NK
Sbjct: 262 --SCYQQNRFPSPTTIADYKEVAIQNK 286
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 97 PRPPPGAARWLCAACLAPTRESEDSDYNTTLVKLKKRKQRHSND-AVPLQNG 147
P PPP A AA P + S ++ K KK K+ +ND + P+ G
Sbjct: 5 PPPPPPAPAPAAAAPAPPLMTGDRSALLNSIQKGKKLKKATTNDRSAPVVGG 56
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,112
Number of Sequences: 5004
Number of extensions: 61454
Number of successful extensions: 177
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 27
length of query: 332
length of database: 2,362,478
effective HSP length: 73
effective length of query: 259
effective length of database: 1,997,186
effective search space: 517271174
effective search space used: 517271174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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