GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000815-TA|BGIBMGA000815-PA|IPR001965|Zinc finger,
PHD-type, IPR001487|Bromodomain, IPR011011|Zinc finger, FYVE/PHD-type
         (332 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17717-1|CAA76832.1|  101|Anopheles gambiae cE5 protein protein.       24   6.8  
AY341213-1|AAR13777.1|  260|Anopheles gambiae SRPN9 protein.           24   6.8  
AY341212-1|AAR13776.1|  260|Anopheles gambiae SRPN9 protein.           24   6.8  
EF117200-1|ABL67437.1|  421|Anopheles gambiae serpin 1 protein.        23   9.0  

>Y17717-1|CAA76832.1|  101|Anopheles gambiae cE5 protein protein.
          Length = 101

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 291 DLPSLPELSFSKRKEAESQEHSAGPSSDDEDDLPIAKRKKH 331
           D+P+  E  F    E   + HS+ PS D E++   +  ++H
Sbjct: 29  DVPTYDEEDFD---EESLKPHSSSPSDDGEEEFDPSLLEEH 66


>AY341213-1|AAR13777.1|  260|Anopheles gambiae SRPN9 protein.
          Length = 260

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 311 HSAGPSSDDEDDLP 324
           +SAGPS+D+ DD P
Sbjct: 144 YSAGPSADNADDGP 157


>AY341212-1|AAR13776.1|  260|Anopheles gambiae SRPN9 protein.
          Length = 260

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 311 HSAGPSSDDEDDLP 324
           +SAGPS+D+ DD P
Sbjct: 144 YSAGPSADNADDGP 157


>EF117200-1|ABL67437.1|  421|Anopheles gambiae serpin 1 protein.
          Length = 421

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 184 HEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIE 218
           H+       D    L R+V +H+DS   + P SI+
Sbjct: 34  HQSSFVSRSDFDWNLAREVFRHEDSNVVFSPFSIK 68


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.312    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,504
Number of Sequences: 2123
Number of extensions: 13150
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 4
length of query: 332
length of database: 516,269
effective HSP length: 64
effective length of query: 268
effective length of database: 380,397
effective search space: 101946396
effective search space used: 101946396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)