Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000815-TA|BGIBMGA000815-PA|IPR001965|Zinc finger,
PHD-type, IPR001487|Bromodomain, IPR011011|Zinc finger, FYVE/PHD-type
(332 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 88 9e-18
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 85 5e-17
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 77 2e-14
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 73 2e-13
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 72 6e-13
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 71 8e-13
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 71 1e-12
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 70 2e-12
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 70 2e-12
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 69 4e-12
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 67 1e-11
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 67 2e-11
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 67 2e-11
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 64 2e-10
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 62 4e-10
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 62 4e-10
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 60 2e-09
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 60 2e-09
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 60 2e-09
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 59 4e-09
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 59 5e-09
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 54 2e-07
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 51 1e-06
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 51 1e-06
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 40 0.002
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 38 0.012
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 38 0.012
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 34 0.12
At2g45920.1 68415.m05710 U-box domain-containing protein contain... 32 0.62
At5g58140.4 68418.m07274 protein kinase family protein / non pho... 31 0.82
At5g58140.3 68418.m07277 protein kinase family protein / non pho... 31 0.82
At5g58140.2 68418.m07276 protein kinase family protein / non pho... 31 0.82
At5g58140.1 68418.m07275 protein kinase family protein / non pho... 31 0.82
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 31 0.82
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 31 1.1
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 31 1.1
At3g63150.1 68416.m07092 GTP-binding protein-related low similar... 31 1.4
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 31 1.4
At4g12620.1 68417.m01988 replication control protein, putative s... 30 1.9
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 30 2.5
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 29 3.3
At5g44150.1 68418.m05403 expressed protein 29 3.3
At4g14700.1 68417.m02259 replication control protein, putative s... 29 3.3
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 4.4
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 29 4.4
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 29 4.4
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain... 29 4.4
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 7.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 7.6
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 28 7.6
At1g61030.1 68414.m06871 expressed protein 28 7.6
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 87.8 bits (208), Expect = 9e-18
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 13/151 (8%)
Query: 168 SNGKDRRSKNSLTNGVHEERAARGPDAVQQ---LLRDVIKHKDSWPFYEPVSIEDVP--D 222
+N K + + G H PD ++Q + R + +HK +WPF EPV ++ + D
Sbjct: 88 NNSKGNSAGKEKSKGKH----VSSPDLMRQFATMFRQIAQHKWAWPFLEPVDVKGLGLHD 143
Query: 223 YLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPV-AKAGGRLEK 281
Y VI++PMDL TIK+K+E S+YS+ E+ AD+ L+F N YN + V A LEK
Sbjct: 144 YYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVYVMAESLLEK 203
Query: 282 FVNKRCAELDLPSLPELSFSKRKEAESQEHS 312
F K L +P L E K+ + E+++H+
Sbjct: 204 FEEKWL--LIMPKLVE-EEKKQVDEEAEKHA 231
>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 276
Score = 85.4 bits (202), Expect = 5e-17
Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 198 LLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
+ R + +HK +WPF EPV ++ + DY VI++PMDL TIK+K+E S+YS+ E+ AD+
Sbjct: 7 MFRQIAQHKWAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADV 66
Query: 256 ALIFHNCYTYNTDTHPV-AKAGGRLEKFVNKRCAELDLPSLPELSFSKRKEAESQEHS 312
L+F N YN + V A LEKF K L +P L E K+ + E+++H+
Sbjct: 67 RLVFKNAMRYNEEKEDVYVMAESLLEKFEEKWL--LIMPKLVE-EEKKQVDEEAEKHA 121
>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
identical to histone acetyltransferase GCN5 [Arabidopsis
thaliana] GI:13591696; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00439: Bromodomain
Length = 568
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 195 VQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEEL-IA 253
++ LL+ + H D+WPF EPV DVPDY D+I P+DL I +++E QY ++ +A
Sbjct: 464 MRALLKTMQDHADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLDMFVA 523
Query: 254 DIALIFHNCYTYNTDTHPVAKAGGRLE 280
D +F+NC TYN+ K RLE
Sbjct: 524 DARRMFNNCRTYNSPDTIYYKCATRLE 550
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 198 LLRDVIKHKDSWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
LLR + H SW F PV + ++PDYL I PMDL T+K+ L YSS E AD+
Sbjct: 183 LLRKLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHEFAADV 242
Query: 256 ALIFHNCYTYNTDTHPVAKAGGRLEKFVNKR 286
L F N TYN H V G L K R
Sbjct: 243 RLTFTNAMTYNPPGHDVHIMGDILSKLFEAR 273
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 71.7 bits (168), Expect = 6e-13
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 188 AARGPDAVQQ---LLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEK 242
A R D ++Q + R + +HK +WPF PV++E + DY +VID+PMD +TIK ++E
Sbjct: 88 AKRMQDLMRQFGTIFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEA 147
Query: 243 SQ---YSSDEELIADIALIFHNCYTYNTDTHPV-AKAGGRLEKFVNK 285
Y ++ AD+ L+F N YN +T V + A LEKF K
Sbjct: 148 KDGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEK 194
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 198 LLRDVIKHKDSWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
LLR +++H+ W F EPV ++PDY +VI +PMDL T+K KL K+ YS+ +E AD+
Sbjct: 76 LLRFLMEHRGGWLFKEPVDPVKMEIPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADV 135
Query: 256 ALIFHNCYTYN---TDTHPVAK 274
L F N YN + H +AK
Sbjct: 136 RLTFANAMHYNPLWNEVHTIAK 157
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 196 QQLLRDVIKHKDSWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIA 253
+ LL+ ++ + W F PV + ++PDY +I PMDL T+K KL YSS E A
Sbjct: 134 ESLLKRLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSA 193
Query: 254 DIALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPS 294
D+ L F N TYN + V + L KF R ++ S
Sbjct: 194 DVRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTIEKKS 234
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 198 LLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
LL ++KHK W F PV ++ + DY +I+ PMDL TIK L K+ Y S E D+
Sbjct: 428 LLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDV 487
Query: 256 ALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPSLPELSF 300
L FHN TYN + V L + +R A ++ E+ F
Sbjct: 488 RLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMRF 532
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 70.1 bits (164), Expect = 2e-12
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 198 LLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
LL ++KHK W F PV ++ + DY +I+ PMDL TIK L K+ Y S E D+
Sbjct: 428 LLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDV 487
Query: 256 ALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPSLPELSF 300
L FHN TYN + V L + +R A ++ E+ F
Sbjct: 488 RLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREMRF 532
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 68.9 bits (161), Expect = 4e-12
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 196 QQLLRDVIKHKDSWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIA 253
+ LL+ ++ H+ W F PV + ++ DY +VI+ PMDL T+K KL YS E A
Sbjct: 142 EALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSEFAA 201
Query: 254 DIALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELD 291
D+ L F N TYN + V L KF R L+
Sbjct: 202 DVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLE 239
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 169 NGKDRRSKNSLTNGVHEERAARGPDAV----QQLLRDVIKHKDSWPFYEPVSIEDVP--D 222
N K + + GVH A +G + LL ++KHK W F PV + + D
Sbjct: 93 NKKLKTANGGKKGGVHGAAADKGTVQILKSCNNLLTKLMKHKSGWIFNTPVDVVTLGLHD 152
Query: 223 YLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPV 272
Y ++I +PMDL T+K +L KS Y S E D+ L F+N YN H V
Sbjct: 153 YHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLTFNNAMLYNPVGHDV 202
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 196 QQLLRDVIKHKDSWPFYEPVS--IEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIA 253
+ LL + HK WPF PV + ++PDY +VI PMDL TI+ +L K +YSS + A
Sbjct: 166 ETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLDFAA 225
Query: 254 DIALIFHNCYTYN 266
D+ L F N YN
Sbjct: 226 DVRLTFSNSIAYN 238
>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 145
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 197 QLLRDVIKHKDSWPFY-EPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
+L+ D ++ KD + Y EPV E++PDY D+I+ PMD +T+++KL YS+ EEL +D+
Sbjct: 52 ELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDV 111
Query: 256 ALIFHNCYTYNT 267
LI N YN+
Sbjct: 112 LLICSNAMQYNS 123
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 203 IKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNC 262
+K + S F +PVS ++ PDYLD+++ PMDL+TI++K+ K +Y + E+ D+ I +N
Sbjct: 1816 LKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNA 1875
Query: 263 YTYNTDTHP 271
+ YN +P
Sbjct: 1876 HLYNDGRNP 1884
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 62.5 bits (145), Expect = 4e-10
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 197 QLLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIAD 254
Q+L ++KHK SW F PV + + DY ++D+PMDL T+K LEK Y S + +D
Sbjct: 255 QILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASD 314
Query: 255 IALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAELDLPSLPELSFSKRKEAESQEHSAG 314
+ L F N +YN G + K ++ D+ P L + +E + S+
Sbjct: 315 VRLTFTNAMSYN-------PKGQDVYLMAEKLLSQFDVWFNPTLKRFEAQEVKVMGSSSR 367
Query: 315 PSSDD 319
P +D
Sbjct: 368 PGPED 372
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 198 LLRDVIKHKDSWPFYEPVSIEDVP--DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADI 255
LL ++KHK +W F PV + + DY +++ +PMDL T+K KL KS Y S + D+
Sbjct: 139 LLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKSPLDFAEDV 198
Query: 256 ALIFHNCYTYNTDTHPV 272
L F+N YN H V
Sbjct: 199 RLTFNNAILYNPIGHDV 215
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 201 DVIKHKDSWPFY-EPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIF 259
D ++ KD++ Y +P E++PDY ++I PMD TT+++KLE Y++ E+ A++ LI
Sbjct: 154 DRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEANVFLIC 213
Query: 260 HNCYTYNT-DTHPVAKAGGRLE 280
N YN+ DT +A LE
Sbjct: 214 TNAMEYNSADTVYYRQARAMLE 235
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 201 DVIKHKDSWPFY-EPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIF 259
D ++ KD++ Y +P E++PDY ++I PMD TT+++KLE Y++ E+ D+ LI
Sbjct: 155 DRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLIC 214
Query: 260 HNCYTYNT-DTHPVAKAGGRLE 280
N YN+ DT +A LE
Sbjct: 215 TNAMEYNSADTVYYRQARAMLE 236
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 201 DVIKHKDSWPFY-EPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIF 259
D ++ KD++ Y +P E++PDY ++I PMD TT+++KLE Y++ E+ D+ LI
Sbjct: 154 DRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLIC 213
Query: 260 HNCYTYNT-DTHPVAKAGGRLE 280
N YN+ DT +A LE
Sbjct: 214 TNAMEYNSADTVYYRQARAMLE 235
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 163 EKLNMSNGKDRRSKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVP- 221
+K N+S G R ++ ++ E+ A + Q+L ++KHK +W F PV + +
Sbjct: 142 QKKNVS-GLKRSNQFGPSDPESEKLLAGMLNTCSQILVKLMKHKWAWVFNTPVDVVGLGL 200
Query: 222 -DYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYN 266
DY V+ +PMDL T+K L+K Y S + D+ L F N TYN
Sbjct: 201 HDYHQVVKKPMDLGTVKLNLDKGFYVSPIDFATDVRLTFDNAMTYN 246
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 58.8 bits (136), Expect = 5e-09
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 201 DVIKHKDSWPFY-EPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIF 259
D ++ KD++ Y +PV E++PDY ++I PMD +T++ KL+ YS+ E+ D+ LI
Sbjct: 185 DRLQKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFLIC 244
Query: 260 HNCYTYNT 267
N YN+
Sbjct: 245 TNAMEYNS 252
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 198 LLRDVIKHKDSWPFYEPVSIE--DVPDYLDVIDQPMDLTTIKEKLEK-SQYSSDEELIAD 254
+++ ++K + + PF PV+ E +PDY D+I PMD TI EK ++Y + E++ D
Sbjct: 222 VIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNNFEKGNKYMNSEDVYKD 281
Query: 255 IALIFHNCYTYN 266
+ I++NC YN
Sbjct: 282 VNYIWNNCSKYN 293
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 208 SWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYN 266
S+ F +PV+ ++ P+YL+++ PMDL+TI++K+ + +Y ++ D+ I N + YN
Sbjct: 1598 SYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYN 1656
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 211 FYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTH 270
F+ PV+ ED P+Y +I PMD T+ ++++ QY + + D+ LI N YN D +
Sbjct: 918 FHFPVTDEDAPNYRSIIQIPMDTATLLQRVDTGQYLTCTPFLQDVDLIVRNAKAYNGDDY 977
Query: 271 PVAKAGGR 278
A+ R
Sbjct: 978 AGARIVSR 985
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 39.9 bits (89), Expect = 0.002
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 197 QLLRDVIKHKDSWP----FYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQY-SSDEEL 251
Q L D+IK S P F + +D DY +I Q +D+ TI++K+EK Y SS
Sbjct: 98 QPLIDIIKLIRSHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKKMEKGSYVSSSLSF 157
Query: 252 IADIALIFHNCYTYNTDTHPVAKAGGRLEKFVN----KRCAELD---LPSLPELSFSKRK 304
D+ L+F N + + + A L V+ KR +L + S E S S++K
Sbjct: 158 YRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEMKKRTGKLGHCVIKSEAESSVSRQK 217
Query: 305 EA 306
+
Sbjct: 218 SS 219
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1 MQKVPEGDWFCDQCKPKEHKRSPRKKRKLYSE 32
+ +VPEGDW C++C + K+ KRK +E
Sbjct: 318 LDEVPEGDWLCEECAEEAEKQKQEAKRKRETE 349
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 174 RSKNSLTNGVHEERAARGPDAVQQLLRDVIK-HKDSWPFYEPVSIEDVPDYLDVIDQPMD 232
+ K G E R+A L D+I+ H F + ++ DY ++ Q +D
Sbjct: 290 KRKRRKQGGAGEIRSAESKSQPLISLLDLIRSHPRGSLFERRLRSQEAKDYKSMVKQHLD 349
Query: 233 LTTIKEKLEKSQYSSDEELI-ADIALIFHNCYTY 265
+ TI+ KL++ Y S + D+ L+F N +
Sbjct: 350 IETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVF 383
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 1 MQKVPEGDWFCDQCK--PKEHKRSPRKKRKLYSEEDV 35
++KVP+G W C++CK K K KRK SE +V
Sbjct: 237 LKKVPKGYWLCEECKFAEKAEKHKLETKRKRESEVNV 273
>At2g45920.1 68415.m05710 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 400
Score = 31.9 bits (69), Expect = 0.62
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 231 MDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLEKFVNKRCAEL 290
M+L ++EKLEK +Y S+ + L+ YN T + KA + + R ++
Sbjct: 247 MELKKVREKLEKMRYISENRITESYMLVQKLQDKYNLATKVLRKAKEERDLLIKGR--DI 304
Query: 291 DLPSLPELSFSKRKEAESQEHSAGP 315
+ + EL +++ + S EH P
Sbjct: 305 AIIEVEEL---RKEVSRSDEHREAP 326
>At5g58140.4 68418.m07274 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 689
Score = 31.5 bits (68), Expect = 0.82
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 175 SKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLT 234
SK +N HE+ P+ + L +VI +DSW D+ D I Q +DL
Sbjct: 332 SKLKSSNNRHEDLLRMEPEELM-LSTEVIGQRDSW---------DLSDRERDIRQGIDLA 381
Query: 235 TIKEKLEKSQYSSDEELIADIALIF 259
T E++EK+ SD L D +IF
Sbjct: 382 TTLERIEKNFVISDPRL-PDNPIIF 405
>At5g58140.3 68418.m07277 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 31.5 bits (68), Expect = 0.82
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 175 SKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLT 234
SK +N HE+ P+ + L +VI +DSW D+ D I Q +DL
Sbjct: 332 SKLKSSNNRHEDLLRMEPEELM-LSTEVIGQRDSW---------DLSDRERDIRQGIDLA 381
Query: 235 TIKEKLEKSQYSSDEELIADIALIF 259
T E++EK+ SD L D +IF
Sbjct: 382 TTLERIEKNFVISDPRL-PDNPIIF 405
>At5g58140.2 68418.m07276 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 31.5 bits (68), Expect = 0.82
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 175 SKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLT 234
SK +N HE+ P+ + L +VI +DSW D+ D I Q +DL
Sbjct: 332 SKLKSSNNRHEDLLRMEPEELM-LSTEVIGQRDSW---------DLSDRERDIRQGIDLA 381
Query: 235 TIKEKLEKSQYSSDEELIADIALIF 259
T E++EK+ SD L D +IF
Sbjct: 382 TTLERIEKNFVISDPRL-PDNPIIF 405
>At5g58140.1 68418.m07275 protein kinase family protein / non
phototropic hypocotyl 1-like protein (NPL1) contains
Pfam domains, PF00069: Protein kinase domain and
PF00785: PAC motif; similar to SP:O48963 Nonphototropic
hypocotyl protein 1 (Phototropin) [Mouse-ear
cress] {Arabidopsis thaliana}; identical to cDNA non
phototropic hypocotyl 1-like (NPL1) GI:5391441
Length = 915
Score = 31.5 bits (68), Expect = 0.82
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 175 SKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLT 234
SK +N HE+ P+ + L +VI +DSW D+ D I Q +DL
Sbjct: 332 SKLKSSNNRHEDLLRMEPEELM-LSTEVIGQRDSW---------DLSDRERDIRQGIDLA 381
Query: 235 TIKEKLEKSQYSSDEELIADIALIF 259
T E++EK+ SD L D +IF
Sbjct: 382 TTLERIEKNFVISDPRL-PDNPIIF 405
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 183 VHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEK 242
+ +ER + L++ + KH+DS+ + D+ + P+ I E+LE
Sbjct: 1481 IEDERREKLLSLFAGLVKSISKHQDSYGIQKLNEAAQKMDFCNRFPVPLYPELIHERLEN 1540
Query: 243 SQYSSDEELIADIALIFHNCYTY 265
Y S E D+ + N Y
Sbjct: 1541 QYYRSIESFKHDVDAMLSNAELY 1563
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 31.1 bits (67), Expect = 1.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1 MQKVPEGDWFCDQCKPKEHK 20
++ +PEGDWFC QC +++
Sbjct: 187 VKAIPEGDWFCRQCLSSKNR 206
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 31.1 bits (67), Expect = 1.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1 MQKVPEGDWFCDQCKPKEHK 20
++ +PEGDWFC QC +++
Sbjct: 187 VKAIPEGDWFCRQCLSSKNR 206
>At3g63150.1 68416.m07092 GTP-binding protein-related low similarity
to SP|Q38912 RAC-like GTP binding protein ARAC3
(GTP-binding protein ROP6) {Arabidopsis thaliana};
contains Pfam profile PF00036: EF hand (domain)
Length = 643
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 170 GKDRRSKNSLTNGVHEERAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLD 225
G K+SL + V E PD V ++L + D++P Y P++I D P +D
Sbjct: 21 GDKGTGKSSLISAVASETF---PDNVPRVLPPITLPADAFPDYIPITIVDTPSSID 73
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 30.7 bits (66), Expect = 1.4
Identities = 8/15 (53%), Positives = 14/15 (93%)
Query: 2 QKVPEGDWFCDQCKP 16
++VPEG+W+C+ C+P
Sbjct: 537 REVPEGNWYCEGCRP 551
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 1 MQKVPEGDWFCDQCKPKEHKRS 22
+++VPEGDW C C+ K+ +S
Sbjct: 199 LKEVPEGDWICQFCEVKKSGQS 220
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 218 EDVPDYLDVIDQPMDLTTIKEKLEKSQYSSDEELIADIAL--IFHNCYTYNTDTHPVAKA 275
E +P LD + + + K K ++S+ D E + ++A + H ++ +
Sbjct: 141 EGLPSVLDSMGSELGDSRKKRKKKRSEEKQDHEDVDELANEDLEHEESEFSDEESEEEPV 200
Query: 276 GGRLEKFVNKRCAELDLPSLPEL-SFSKRKEAESQEHSAGPSSDDEDDLPIAKRK 329
G R K K+ +D +L + + E+E+ + PSS ++ D P+ +RK
Sbjct: 201 GKRDRKRHKKKKKSVDEELESDLMNITDDGESETVNYHDSPSSLEKVDTPLHERK 255
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 29.5 bits (63), Expect = 3.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1 MQKVPEGDWFCDQC 14
++ VP+GDWFC C
Sbjct: 723 LEDVPDGDWFCQSC 736
>At5g44150.1 68418.m05403 expressed protein
Length = 355
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 227 IDQPMDLTTIKEKLEKSQYSSDEELIADIALIFHNCYTYNTDTHPVAKAGGRLEKFVNKR 286
+DQ D+ + ++ EKS + AD+ L+ ++ +T +PVA A G+ F +
Sbjct: 235 LDQVKDILILTDESEKSS-----AIEADLDLLLNSFSEAHTQPNPVASASGKSSAFETEL 289
Query: 287 CAELDLPSLPELSFSKRKEAESQEHSAGPSSDDEDDL 323
+ L S E F+K Q+ +D DDL
Sbjct: 290 DSLLKSHSSTE-QFNKPGNPSDQKIHMTGFNDVLDDL 325
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 1 MQKVPEGDWFCDQCKPKE 18
+++VPEGDW C C+ K+
Sbjct: 197 LKEVPEGDWICQFCEVKK 214
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 4 VPEGDWFCDQCKPKEHKRSPRKKRKLYSEEDVEEPPN 40
+PEGDW+C +C + +++ E +E P+
Sbjct: 642 LPEGDWYCPECAFDRRAPGLKPDKQIRGAEFIEIDPH 678
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 116 RESEDSDYNTTLVKLKKRKQRHSN-DAVPLQNGTTXXXXXXXXXXXXHEKLNMSNGKDRR 174
RE++++ + K KRK+R+S+ D+ + + +E + S+GK R+
Sbjct: 206 REAKETRKKESNEKRIKRKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRK 265
Query: 175 SKNSLTN-GVHEERAARG 191
K++ + G ER ++G
Sbjct: 266 RKSTTRHKGRRGERKSKG 283
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 116 RESEDSDYNTTLVKLKKRKQRHSN-DAVPLQNGTTXXXXXXXXXXXXHEKLNMSNGKDRR 174
RE++++ + K KRK+R+S+ D+ + + +E + S+GK R+
Sbjct: 206 REAKETRKKESNEKRIKRKRRYSSSDSYSSSSDSDSDSESEAYSSSSYESSSSSDGKHRK 265
Query: 175 SKNSLTN-GVHEERAARG 191
K++ + G ER ++G
Sbjct: 266 RKSTTRHKGRRGERKSKG 283
>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471;contains Pfam PF00917: Meprin And
TRAF-Homology (MATH) domain
Length = 1052
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 163 EKLNMSNGKDRRSKNSLTNGVHEERAARGPDAVQ--QLLRDVIKHKDSWPFYEPVSIEDV 220
+K N + GKD+R + ++ H + + Q + +D + K +P ++ DV
Sbjct: 432 QKRNKNKGKDKRKEEKVSFATHAKDLEENQNQNQNDEEEKDSVTEKAQSSAEKPDTLGDV 491
Query: 221 PDYLDVIDQPMDLTTIKEKLEKSQYSS 247
D D +D D+ ++ LE SS
Sbjct: 492 SDISDSVDGSADI--LQPDLEDRDSSS 516
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 302 KRKEAESQEHSAGPSSDDEDDLPIAKRKK 330
K K + G DD+DD+PI+KR K
Sbjct: 273 KMKAKQLSTREDGTDDDDDDDVPISKRFK 301
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 28.3 bits (60), Expect = 7.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 MQKVPEGDWFCDQCKPKEHKRSP 23
++++P G W C +C P P
Sbjct: 92 LKRIPNGKWICPKCSPNSEALKP 114
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 2 QKVPEGDWFCDQCKPKEHKRSPRKKRKLYSEE 33
+ VP G+WFC CK K +K RK + ++
Sbjct: 437 ESVPNGEWFCTACKAAILK--VQKARKAFEKK 466
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 187 RAARGPDAVQQLLRDVIKHKDSWPFYEPVSIEDVPDYLDVIDQPMDLTTIKEKLEKSQYS 246
R G DAV ++ D +SW ++ +S+ED+ D L+ + L +K +E + +
Sbjct: 301 RELGGLDAVFDVVMDCHTVMESWVTHDTLSVEDIKDDLNKQSLMLLLKCLK-IMENATFL 359
Query: 247 SDEELI 252
S E I
Sbjct: 360 STENQI 365
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,086,786
Number of Sequences: 28952
Number of extensions: 323895
Number of successful extensions: 997
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 54
length of query: 332
length of database: 12,070,560
effective HSP length: 81
effective length of query: 251
effective length of database: 9,725,448
effective search space: 2441087448
effective search space used: 2441087448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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