Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000814-TA|BGIBMGA000814-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR013136|WSTF/Acf1/Cbp146, IPR004022|DDT,
IPR001965|Zinc finger, PHD-type
         (1015 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    40   0.002
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    31   0.61 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    30   1.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   2.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   3.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    29   3.3  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    29   3.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   4.3  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    29   4.3  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   5.7  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    28   5.7  
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe...    28   7.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   10.0 
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   10.0 
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   10.0 

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 972  DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
            +P  +LLCD C A +H  CL PPL     E W
Sbjct: 279  NPETILLCDGCEAAYHTSCLDPPLTSIPKEDW 310


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 238 EFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXP 297
           E +SS  +L  P++      P S++    S K+P  D  G +ES  K L           
Sbjct: 88  EIDSSSSMLPPPSSDPFS-SPLSSSLHRSSPKRPH-DSLG-EESPGKLLRTSVKQEPDSE 144

Query: 298 KMPVDPAAKKSAQELAEKMRRAEDQMR 324
           +    P  KKS + L   + +AEDQ R
Sbjct: 145 EEIDSPTKKKSFKSLDTSIFQAEDQFR 171


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 975  AMLLCDACNAGHHLYCLTPPLQV--QAVEKWQ 1004
            ++L CD CN+  H  CL PPL      + KW+
Sbjct: 421  SILACDYCNSYWHPDCLNPPLATLPSNLRKWK 452


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 215 KSALNEYNISKVSFSQIFTGNPPEFES--SKKLLKSPAATKVQHKPASATKLNKSLKKPS 272
           KS ++ Y+    S +   T NPP  E   + K   S  ATK      SA+  N S    +
Sbjct: 189 KSGVSSYSSKSQSVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGA 248

Query: 273 PDKK 276
           P  K
Sbjct: 249 PTNK 252


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 231 IFTGNPPEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
           IFT  P   + SK+ +K    T V++ P      N   +K  P KK +   + K
Sbjct: 498 IFTQGPNSTKESKQAVKE--ETSVKNSPKGKNTKNGKAEKEKPGKKSKAPKLSK 549


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 976 MLLCDACNAGHHLYCL 991
           +LLCD C+  +H YCL
Sbjct: 137 LLLCDGCDDAYHTYCL 152


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 214 KKSALNEYNISKVSFSQIFTGNPPEFESSKKLLKSPAA-TKVQHKPASATKLNKSLKKPS 272
           K+S  N+Y +S V  + I +G   EFE+        ++  ++   P      +KS++ PS
Sbjct: 92  KRSIDNDYELSNVKRNDITSGKNREFENEHHPASDTSSWRELPSIPTLEELTSKSVELPS 151

Query: 273 PDKKGRQESMDKFL 286
            +  G  +S + +L
Sbjct: 152 NNIYGGYKSFEDYL 165


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 750  EEQIEALIQSLNKRGIRESELRQSLELDKDNIIQYLRKCPVKY 792
            E+Q+E      ++ G+ E E   S++  ++ ++  +R+C  KY
Sbjct: 2049 EDQMEMYADEESRAGVLEPEGMVSIKFRREKLLSLMRRCDHKY 2091


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 40  YCERIILVNSMVWTCEMTGKNNLTY 64
           YC   +L+NS VW C +  +N L +
Sbjct: 130 YCHHGLLMNSEVWVCNVDPRNCLVF 154


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
            Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 976  MLLCDACNAGHHLYCLTPPLQVQAVE 1001
            ++ CD CN+ +H  C  PP+    V+
Sbjct: 207  IVFCDGCNSPYHQLCHHPPIDDATVQ 232


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 695 SRGNSPKKPLTNINGLTHRNGFDDITQQLLICSGDL 730
           S   +P++PLT  +   H +GFD++    ++   DL
Sbjct: 86  SSEQNPRRPLTKPSEGVHNHGFDNVNHDYVLYVNDL 121


>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 767 ESELRQSLELDKDNIIQYLRK-CPVKYLNGSAASDREAWRGTIMLRGYDKQADYLTWG 823
           ++ L  S  L    +I YLRK   V  + G+A     AW   +M RG  +  +Y  +G
Sbjct: 5   QNALVLSFLLTVGGLIGYLRKKSKVSLIAGTALGANFAWASKLMERGSSQGINYAFYG 62


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 977 LLCDACNAGHHLYCLTPPL 995
           + C+ C    HL CL PPL
Sbjct: 130 ICCEGCPCSFHLSCLEPPL 148


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 849 ELESIPVNKYRDPGYYLEAA----RVNGVKVEGDELKARRDVIRGLACALLQVSQAIHAK 904
           EL+        + G +LEAA    RV   KV G+EL  R ++     C LL +   I  +
Sbjct: 176 ELQLCNARALDETGQFLEAAKCYYRVLQYKVPGNELIYRENLCSVAQCLLLAIPSPIVLQ 235

Query: 905 YLK 907
           +L+
Sbjct: 236 FLQ 238


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 647 TEPRGPCRDKPLPSAP----EHGEDTLTYVTRLFETEKERASSDKEND 690
           TEP  P  +KP PS P    +HG +       L E + +  S  KE +
Sbjct: 114 TEPSTPSTEKPEPSTPSGESDHGSNAGNESLPLLEEDHKPESLSKEQE 161


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,245,208
Number of Sequences: 5004
Number of extensions: 172794
Number of successful extensions: 468
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 21
length of query: 1015
length of database: 2,362,478
effective HSP length: 80
effective length of query: 935
effective length of database: 1,962,158
effective search space: 1834617730
effective search space used: 1834617730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)