Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000814-TA|BGIBMGA000814-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR013136|WSTF/Acf1/Cbp146, IPR004022|DDT,
IPR001965|Zinc finger, PHD-type
(1015 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 87 7e-17
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 40 0.011
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 36 0.18
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 35 0.24
At4g12620.1 68417.m01988 replication control protein, putative s... 34 0.42
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 34 0.55
At3g28770.1 68416.m03591 expressed protein 33 0.73
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 33 0.97
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 33 0.97
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 33 0.97
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 33 1.3
At4g14700.1 68417.m02259 replication control protein, putative s... 32 1.7
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 32 1.7
At4g01810.1 68417.m00238 protein transport protein-related relat... 32 2.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 3.0
At5g09860.1 68418.m01140 nuclear matrix protein-related low simi... 31 3.0
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 31 5.2
At4g12750.1 68417.m02002 expressed protein 31 5.2
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 30 6.8
At5g39050.1 68418.m04725 transferase family protein similar to a... 30 6.8
At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C... 30 6.8
At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C... 30 6.8
At1g67290.1 68414.m07658 glyoxal oxidase-related contains simila... 30 6.8
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 30 6.8
At2g38750.1 68415.m04758 annexin 4 (ANN4) nearly identical to an... 30 9.0
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 86.6 bits (205), Expect = 7e-17
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 1 MPLLKRKAFEKSTASEYLRDDDEVFHCEITDEIFKDYEEYCERIILVNSMVWTCEMTGKN 60
MPLLK+K+ + + L + V+ +T+EIF+DY+ Y +R+ L + VWTC+ TGK
Sbjct: 1 MPLLKKKSHKLLEPPKNLEPQELVYQVRLTNEIFRDYQLYLKRLNLYRNRVWTCKSTGKT 60
Query: 61 NLTYSEALASEKAARNQLKDFPMELRIPILYLAARTNRCSFAEMSEDVFNFVRDRYFVGE 120
+L+Y EAL SEK A +++ P EL P L + + + S ++++ + ++D +F G
Sbjct: 61 SLSYEEALDSEKLAGKKVQTLPRELVAPALRI-IQFSTLSLKDLADKIATELQDCFFPG- 118
Query: 121 TIEACLEGDHWTEAHILSVTAQKQHPDSK 149
A L G+ E H + DSK
Sbjct: 119 ---AELYGERDGELHPCKILRIVSDGDSK 144
Score = 40.7 bits (91), Expect = 0.005
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 740 DRPQWWVYHTEEQIEALIQSLNKRGIRESELRQSLELDKDNIIQYLRK 787
D +W Y +E+++AL+ SLN++G RE L LE+ D I L+K
Sbjct: 632 DSEEWGYYTAKEELDALMGSLNRKGERELSLYTQLEIFYDRICSTLQK 679
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 39.5 bits (88), Expect = 0.011
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPL 995
D ++LLCD C+A +H YCL PPL
Sbjct: 1298 DDDSVLLCDTCDAEYHTYCLNPPL 1321
Score = 35.1 bits (77), Expect = 0.24
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 736 HGKVDRPQWWVYHTEEQIEALIQSLNKRGIRESELRQSL 774
HG++ W Y TE +I L+Q L+ ++E +LR+S+
Sbjct: 1684 HGRLRLSPWTYYETETEISELVQWLHDDDLKERDLRESI 1722
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 35.5 bits (78), Expect = 0.18
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
D ++LCD C+ +H+YC+ PP + +W
Sbjct: 413 DDDKIVLCDGCDDAYHIYCMRPPCESVPNGEW 444
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 35.1 bits (77), Expect = 0.24
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 973 PHAMLLCDACNAGHHLYCLTPPL 995
P +LLCD C+ G HL+CL P L
Sbjct: 44 PAKLLLCDKCDKGFHLFCLRPIL 66
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 34.3 bits (75), Expect = 0.42
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
D + M+ CD C G HL CL PPL+ W
Sbjct: 176 DTNIMIECDDCLGGFHLKCLKPPLKEVPEGDW 207
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 33.9 bits (74), Expect = 0.55
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 743 QWWVYHTEEQIEALIQSLNKRGIRESELRQSLE 775
+W + +EE + L+ SL+ RGIRES LR L+
Sbjct: 1136 KWLLIDSEEAFDILVASLDMRGIRESHLRIMLQ 1168
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 33.5 bits (73), Expect = 0.73
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
E K+ + + + +K + N LK+ + D K ++ES D K
Sbjct: 961 EDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREKKEYEEKKS 1020
Query: 300 PVDPAAKKSAQELAEKMRRAEDQMRQRXXXXXXXXXXXNARLQAYLKEWQKVKDDLELED 359
AKK ++ +K R +D ++ A+ K+ ++ K+ E E+
Sbjct: 1021 KTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAK-----KKEEETKEKKESEN 1075
Query: 360 HK 361
HK
Sbjct: 1076 HK 1077
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 33.1 bits (72), Expect = 0.97
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 976 MLLCDA-CNAGHHLYCLTPPLQVQAVEKWQGTPGW 1009
++LCD CN H CL PPL+ +++ G GW
Sbjct: 207 IILCDGTCNRAFHQKCLDPPLETESIP--PGDQGW 239
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 33.1 bits (72), Expect = 0.97
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 153 SAASYVYEVEQYTDATPSTMGQIGTAPFDR--VRRRKGIYSRDKNRLF-LKQFVEHGPGG 209
++A +V + T +T+G G P R RR G D + L + V GPG
Sbjct: 275 TSAGHVEGSSGEENLTDTTLGMFGHVPKGRRGQRRSNGFKKTDNDCLSSMLSLVNTGPGS 334
Query: 210 VICIKKSALNEYNISKVSFSQIFTGNPPEFESSKKLLKSPAATKVQHKPASATKLNKSLK 269
+ ++ ++ IS I P F S KKLL+ +K K KL + L
Sbjct: 335 FMESEEDRPSDSQISLGRQRSIMATRPRNFRSLKKLLQRIIPSKRDRK---GCKLPRGLP 391
Query: 270 K 270
K
Sbjct: 392 K 392
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 33.1 bits (72), Expect = 0.97
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKWQ 1004
++ C+ C H CL PPL+ +VE W+
Sbjct: 61 LVSCNTCTYAFHAKCLVPPLKDASVENWR 89
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 32.7 bits (71), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPP 994
DP+ + C C+A +H YC PP
Sbjct: 211 DPNKFMFCKRCDAAYHCYCQHPP 233
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 32.3 bits (70), Expect = 1.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
M+ CD C G HL CL PPL+ W
Sbjct: 178 MIECDDCLGGFHLNCLKPPLKEVPEGDW 205
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 976 MLLCDA-CNAGHHLYCLTPPLQVQAV 1000
++LCD C+ G H YCL PPL+ + +
Sbjct: 282 IILCDGFCDRGFHQYCLEPPLRKEDI 307
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 31.9 bits (69), Expect = 2.2
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 45 ILVNSMVWTCEMTGKNNLTYSEALASEKAARNQLKDFPMELRIPIL-YLAARTNRCSFAE 103
IL+ S W C + N + E +AS K N+L++FP EL +P++ Y+ R F
Sbjct: 217 ILIGSGQWQCVICENMNGSKGEYVASSK---NELQNFP-ELSLPLVDYVQTGNKRPGFVP 272
Query: 104 MSEDVFNFVRDRYFVGETIEACLEGDH 130
S+ R V I+ CL+ H
Sbjct: 273 ASDS-----RTSAPVVLVIDECLDEPH 294
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 31.5 bits (68), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+L CD+C +H CL PPL+ KW
Sbjct: 73 LLCCDSCPRTYHTACLNPPLKRIPNGKW 100
>At5g09860.1 68418.m01140 nuclear matrix protein-related low
similarity to nuclear matrix protein p84 [Homo sapiens]
GI:550058
Length = 599
Score = 31.5 bits (68), Expect = 3.0
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 418 KEHSGVFCDIIQMFLTTIFGLQEDEAEDYNENGGIHLSNEDK-EAFPDVGVAKAVELATK 476
K + VFC I MFL F L E A N G + SNE K E P G+ +V+
Sbjct: 161 KANDVVFCGRILMFLAHFFPLSERSA--VNIKGVFNTSNETKYEKDPPKGI--SVDFNFY 216
Query: 477 ASKWS-QTYLGTPLS 490
+ WS Q Y P S
Sbjct: 217 KTFWSLQEYFCNPAS 231
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 30.7 bits (66), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+LLCD C+ G H+ CL P + + W
Sbjct: 79 LLLCDKCDRGFHMKCLRPIVVRVPIGTW 106
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 30.7 bits (66), Expect = 5.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 744 WWVYHTEEQIEALIQSLNKRGIRESELRQSLE 775
W V + +E + AL+ L+ RG RE+ L +SLE
Sbjct: 785 WEVINNKEALRALLSVLDDRGRREARLIESLE 816
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 743 QWWVYHTEEQIEALIQSLNKRGIRESEL 770
+W + +EE + L++SL+ RG+RES L
Sbjct: 1110 RWRLIDSEEAFDYLVKSLDVRGVRESHL 1137
>At5g39050.1 68418.m04725 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 348
Score = 30.3 bits (65), Expect = 6.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 638 VAGLFVEAGTEPRGPCRDKPLPSAPEHGEDTLTYVTRLFETEKERASSDKENDSAANSRG 697
VA +F G EP P K L S PE G D Y L + ++ + +S+++S
Sbjct: 225 VAKVFT-GGKEPENPKSLKLLWS-PEIGPDVFRYTLNLTREDIQKLRERLKKESSSSSVS 282
Query: 698 NSPKK 702
+SPK+
Sbjct: 283 SSPKE 287
>At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GB:CAA72341
[Medicago sativa]; contains Pfam profile: PF00481
Protein phosphatase 2C
Length = 283
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 350 KVKDDLELEDHKMIP----KGTPIDIEGISQSHIGDFLSVLEFVHLYSNILKSKDFL 402
K K + +ED+ + G + + I H GD ++ HL+SNILK +FL
Sbjct: 39 KGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFL 95
>At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GB:CAA72341
[Medicago sativa]; contains Pfam profile: PF00481
Protein phosphatase 2C
Length = 283
Score = 30.3 bits (65), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 350 KVKDDLELEDHKMIP----KGTPIDIEGISQSHIGDFLSVLEFVHLYSNILKSKDFL 402
K K + +ED+ + G + + I H GD ++ HL+SNILK +FL
Sbjct: 39 KGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFL 95
>At1g67290.1 68414.m07658 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 615
Score = 30.3 bits (65), Expect = 6.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 836 NGVLNIPQDLDETELESIPVNKYRDPGYYLEAARVNGVKVEGD 878
N V N+ D + + + P K PGYYL A NGV G+
Sbjct: 568 NNVKNVGGDNHQIQAVAPPSGKLAPPGYYLLFAVYNGVPSVGE 610
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 30.3 bits (65), Expect = 6.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 976 MLLCDACNAGHHLYCL 991
+L+CDAC G+HL CL
Sbjct: 337 VLICDACEKGYHLKCL 352
>At2g38750.1 68415.m04758 annexin 4 (ANN4) nearly identical to
annexin (AnnAt4) [Arabidopsis thaliana] GI:6503084;
contains Pfam profile PF00191: Annexin
Length = 319
Score = 29.9 bits (64), Expect = 9.0
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 341 LQAYLKEWQKVKDDLELEDHKMIPKGTPID-IEGISQSHIGDFL---SVLEFVHLYS--N 394
+ AY E KVKDD D K++ + E + + + L S L HLY N
Sbjct: 156 VSAYRYEGNKVKDDSAKSDAKILAEAVASSGEEAVEKDEVVRILTTRSKLHLQHLYKHFN 215
Query: 395 ILKSKDFLHGALDIETLRKAL 415
+K D L G L +AL
Sbjct: 216 EIKGSDLLGGVSKSSLLNEAL 236
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,002,153
Number of Sequences: 28952
Number of extensions: 895332
Number of successful extensions: 2423
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2390
Number of HSP's gapped (non-prelim): 41
length of query: 1015
length of database: 12,070,560
effective HSP length: 88
effective length of query: 927
effective length of database: 9,522,784
effective search space: 8827620768
effective search space used: 8827620768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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