GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000814-TA|BGIBMGA000814-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR013136|WSTF/Acf1/Cbp146, IPR004022|DDT,
IPR001965|Zinc finger, PHD-type
         (1015 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   4.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   6.0  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 347 EWQKVKDDLELEDHKMIPKGTPIDI 371
           +WQK+   +E +D   I K  P+ I
Sbjct: 468 DWQKIAGAVEEDDEDAIEKPAPVKI 492


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 809 MLRGYDKQADYLTWGPNQMYRDDYHQPNGVLNIPQDL 845
           M R YD Q D + +  NQ Y  D +   G+    +DL
Sbjct: 403 MARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDL 439


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,309
Number of Sequences: 317
Number of extensions: 8283
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 1015
length of database: 114,650
effective HSP length: 64
effective length of query: 951
effective length of database: 94,362
effective search space: 89738262
effective search space used: 89738262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)