Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000814-TA|BGIBMGA000814-PA|IPR011011|Zinc finger,
FYVE/PHD-type, IPR013136|WSTF/Acf1/Cbp146, IPR004022|DDT,
IPR001965|Zinc finger, PHD-type
(1015 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 120 8e-27
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-04
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-04
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.003
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.023
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10) 38 0.041
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.13
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 35 0.29
SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.67
SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.67
SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.88
SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 33 0.88
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.88
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 33 0.88
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 33 1.2
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 33 1.5
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.5
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 33 1.5
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.5
SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18) 33 1.5
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 33 1.5
SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.0
SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.0
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 32 2.7
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.7
SB_57296| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.6
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.7
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.7
SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.2
SB_445| Best HMM Match : TPR_2 (HMM E-Value=5.8) 30 8.2
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 120 bits (288), Expect = 8e-27
Identities = 96/378 (25%), Positives = 174/378 (46%), Gaps = 26/378 (6%)
Query: 185 RRKGIYSRDKNRLFLK----QFVEHGPGGVICIKKSALNEYNISKVSFSQIFTGNPPEFE 240
R++G ++RDK + FL+ + G +++ N+Y++ +F+ +P + +
Sbjct: 427 RKRGSFTRDKLKNFLRISCMRSTISSDDGYYIVEEKYRNKYDLGD---PPVFSDSPSKNK 483
Query: 241 SSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKMP 300
SK + +AT + K A A K K +P K ++ + ++ L +
Sbjct: 484 ESKSTKRKKSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQI 543
Query: 301 VDPAAKKSAQE----LAEKMRRAEDQMRQRXXXXXXXXXXXNARLQAYL--KEWQKVKDD 354
+ KK Q+ E+ +R +++++++ + + L +EW + ++D
Sbjct: 544 QEDKEKKKLQKEKDRAVEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRPRED 603
Query: 355 LELEDHKMIPKGTPIDIEGISQSHI-GDFLSVLEFVHLYSNILKSKDFLHGALDIETLRK 413
L+L+D K +P P+ ++ SH+ GD + VLEF++++ + KD L L +
Sbjct: 604 LQLDDLKDLPNPIPVRVK--FPSHLFGDVVMVLEFLNVFGSQFDIKDDFPSGLTFAMLEE 661
Query: 414 ALTMKEHSGVFCDIIQMFLTTIFGLQEDEAEDYNENGGIHLSNEDKEA--FPDVGVAKAV 471
ALT + GV+ D++Q L I DE ED G+ + + K A D KAV
Sbjct: 662 ALTEHDAEGVYYDLLQFLLGAILRTHMDEEED----EGLQTAADAKSALQIEDEDERKAV 717
Query: 472 --ELATKASKWSQTYLGTPLSKLPMDALTVSEILRLHLLXXXXXXXXXXXXXXXXQRGGY 529
+ A A+ W + G PL +L MD T +E+LRLHLL RGG+
Sbjct: 718 VSQSAVMAAAWPLLHQGKPLHELIMDPFTCTELLRLHLLSSGARIGCDDYRWHG--RGGF 775
Query: 530 SSLDDPGLRLRRRAPQLL 547
+ DD G+ R P+++
Sbjct: 776 TYADDVGVEFRHSEPEII 793
Score = 101 bits (242), Expect = 3e-21
Identities = 49/123 (39%), Positives = 75/123 (60%)
Query: 1 MPLLKRKAFEKSTASEYLRDDDEVFHCEITDEIFKDYEEYCERIILVNSMVWTCEMTGKN 60
MPLL RK F + L+ ++EVF C T+E+F++YE + +R IL NS+VW+C TGK+
Sbjct: 118 MPLLNRKPFTPEKPPKDLKPNEEVFVCTHTNEVFREYEAFFKRTILCNSLVWSCRFTGKS 177
Query: 61 NLTYSEALASEKAARNQLKDFPMELRIPILYLAARTNRCSFAEMSEDVFNFVRDRYFVGE 120
LTY EA SE+ + LR +L L T+R A + ++VF++++DR+ GE
Sbjct: 178 GLTYEEAEESEEDIIAIGESLSAPLRQAVLTLVHHTHRGKLANLCDEVFSYLKDRFQEGE 237
Query: 121 TIE 123
+E
Sbjct: 238 EVE 240
Score = 65.7 bits (153), Expect = 2e-10
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 914 EKGRALSTEGGALARWQVSLLECXXXXXXXXXXXXXXXSVCWRASVXXXXXXXXXXXXDP 973
EKG+ + L RW+ SL+ C S+ W SV D
Sbjct: 1577 EKGKNKEKDKTVLERWEESLMACTSLSQVFVHLNTLDGSIAWSKSVLNARCKLCRRKGDA 1636
Query: 974 HAMLLCDACNAGHHLYCLTPPLQ 996
MLLCDAC+ GHH+YCL PP++
Sbjct: 1637 EKMLLCDACDRGHHMYCLKPPIK 1659
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 743 QWWVYHTEEQIEALIQSLNKRGIRESELRQSLELDKDNIIQYLRKCPVKYLN 794
+W + E +E+L+ +LN RG RE LR++L+ D + + KCP + +N
Sbjct: 1150 KWAFISSPEDLESLVSNLNPRGHRERGLREALQSDLKKLATSVNKCPFRDVN 1201
Score = 35.1 bits (77), Expect = 0.29
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 623 LGMDRAYRRYWLNQAVAGLFVEAGTEPRGP 652
LG DR YRRYW + + GLF+E EP P
Sbjct: 984 LGRDRMYRRYWAFRCLKGLFIE-DDEPELP 1012
Score = 34.7 bits (76), Expect = 0.38
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 823 GPNQMYRDDYHQPNGVLNIPQDLDETELESIPVNKYRDPGYYLEAARVNGVKVEGDELKA 882
GP ++ R D+ +P IP L + EL SI V P +E+ + A
Sbjct: 1417 GP-ELARMDHSKPTNFPAIPSHL-KLELTSIQV-----PAVPVESRTGTPLSSVTPTPSA 1469
Query: 883 RRDVIRGLACALLQVSQAIHAKYLKRPLGWDEK 915
+ LA ALL+V + + KYL PLG DE+
Sbjct: 1470 VNSAVMELALALLEVEKGVDPKYLCPPLGEDEE 1502
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 46.0 bits (104), Expect = 2e-04
Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 18/248 (7%)
Query: 744 WWVYHTEEQIEALIQSLNKRGIRESELRQSLELDKDNIIQYLRKCPVKYLNGSAASDREA 803
WW I+ L+++ + RGIRE L+++ + + I +K P + + +D E
Sbjct: 957 WWRLTEPSNIKELVKACHSRGIREKMLQKNFQKYSEYISSSCKK-PFCDEDDDSETDEED 1015
Query: 804 WRGTIMLRGYDKQADYLTWGPNQMYRDDYHQPNGVLNIPQDLDETELESIPVNKYRDPGY 863
+ DK A+ N ++ ++ ++++E E E + + G+
Sbjct: 1016 EKTE------DKLAEGTPVDDNWFPAAEFAVNKAIM---KEVEELE-EKVFAASLQVKGW 1065
Query: 864 YLEAARVNGVKVEGD-ELKARRDVIRGLACALLQVSQAIHAKYLKRPLGWDEKGRALSTE 922
L A G+ + + +++ A L V I +YLK P + + G
Sbjct: 1066 KLPAKVTKGLTYNPEAKTDPENNLLSMAATRLAAVELGIERRYLKHP--FRDDGNITH-- 1121
Query: 923 GGALARWQVSLLECXXXXXXXXXXXXXXXSVCWRASVXXXXXXXXXXXXDPHAMLLCDAC 982
AL W+ ++ + W S+ + +LLCD C
Sbjct: 1122 --ALKVWRAAVASVSNASQLAMCLSMLVGYIAWDKSIMKVFCQMCRTGDNEELLLLCDGC 1179
Query: 983 NAGHHLYC 990
+ G+H YC
Sbjct: 1180 DRGYHTYC 1187
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 44.4 bits (100), Expect = 5e-04
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 623 LGMDRAYRRYWL-NQAVAGLFVEAGTEPRGPCRDKPLPSAPEHGEDTLTYVTRLFETEKE 681
LG DR +RRYWL + V+GLFVE G + D + + E E
Sbjct: 626 LGFDRYHRRYWLFDGPVSGLFVEDGWMSKEEL-------------DYMVEAPEIAEMESR 672
Query: 682 RASSDKENDSAANSRGNSPKKPLTNINGLTHRNGFDDITQQLLICSGDLSTCKVHGKV-- 739
ASS K+ D+ + SP + L+ ++ T+ + + + +++ D K G
Sbjct: 673 VASSVKDADTEEH---QSPME-LSGVD--TNASEENPQSAEVIEIQPDQVQEKPKGLKFR 726
Query: 740 DRPQWWVYHTE-EQIEALIQSLNKRGIRESELRQSLELDKDNIIQYLRK 787
D P W Y+ + I+A +L+ RG RES+LR+ LE + +I + ++K
Sbjct: 727 DVPYSWSYYDDVADIDAFKAALSPRGERESKLREQLEAAEISIQKVMKK 775
Score = 40.3 bits (90), Expect = 0.008
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 894 LLQVSQAIHAKYLKRPLGWDEKGRALSTEGG--ALARWQVSLLECXXXXXXXXXXXXXXX 951
L+++ +A+ ++LK +++ EGG A+ W+ + L
Sbjct: 833 LVRLQEAVFPRFLKGIFDQEKE------EGGKEAVICWKEAALSASTLSRLHLLLGILDS 886
Query: 952 SVCWRASVXXXXXXX-XXXXXDPHAMLLCDACNAGHHLYCLTPPLQVQAVEKWQ 1004
++ W S +LLCD CN G+HL+CL P L + +W+
Sbjct: 887 AIVWDLSAENVKCKVCRRKSRSDETLLLCDECNMGYHLFCLRPSLDRIPLGEWK 940
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 41.9 bits (94), Expect = 0.003
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+LLCD C+ G+H+ CLT PL+ +E+W
Sbjct: 165 LLLCDDCDKGYHMECLTSPLEFVPIEEW 192
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 38.7 bits (86), Expect = 0.023
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKWQ 1004
D +LLCD+C+ +H YCL PPL+ W+
Sbjct: 811 DEARLLLCDSCDISYHTYCLDPPLEKVPPGGWK 843
>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
Length = 389
Score = 37.9 bits (84), Expect = 0.041
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+L CD C+ G+H+YCL PP+ W
Sbjct: 335 LLFCDDCDRGYHMYCLNPPMDKPPEGHW 362
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 36.3 bits (80), Expect = 0.13
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 973 PHAMLLCDACNAGHHLYCLTPPL 995
P +LLCD C+A +H CL PPL
Sbjct: 227 PDTILLCDKCDAAYHTACLRPPL 249
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 35.1 bits (77), Expect = 0.29
Identities = 23/79 (29%), Positives = 32/79 (40%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXX 296
P + K +K PAA K + A K P KK + K L
Sbjct: 572 PAAKPKKASVKKPAAKKAKSPKKKAAKKPAKKSTPKKAKKPAAKKSPKKLSKKPAAKKTP 631
Query: 297 PKMPVDPAAKKSAQELAEK 315
K+ PAAKKS+++ A+K
Sbjct: 632 KKVAKKPAAKKSSKKSAKK 650
Score = 30.7 bits (66), Expect = 6.2
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 243 KKLLKSPAATKVQHKPASATKLNKSLKKP-SPDKKGRQESMDKFLXXXXXXXXXXPKMPV 301
KK+ K A K KP A+ + KK SP KK ++ K PK
Sbjct: 561 KKVTKKVAKKKPAAKPKKASVKKPAAKKAKSPKKKAAKKPAKK----------STPKKAK 610
Query: 302 DPAAKKSAQELAEK 315
PAAKKS ++L++K
Sbjct: 611 KPAAKKSPKKLSKK 624
>SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 33.9 bits (74), Expect = 0.67
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P A K + +K KS KKP+P K + PK
Sbjct: 97 KAKKPAAKKPKAAKKPAAKTTPSKKAKSPKKPAPKKATKSHKKAAKKPVAKKPAVAKPKK 156
Query: 300 PVD-PAAKKSAQELAEK 315
+ PAAKK+A++ A+K
Sbjct: 157 ATNKPAAKKAAKKPAKK 173
>SB_10046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 33.9 bits (74), Expect = 0.67
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 408 IETLRKALTMKEHS-GVFCDIIQMFLTTIFGLQEDEAEDYNENGGI--HLSN--EDKEAF 462
I TLRKA+ ++ GVF D + F T +G+ D+ E Y G +N D++ +
Sbjct: 97 INTLRKAIDNNMYTCGVFLDFSKAFDTVNYGILLDKLEAYGIRGLTLKWFTNYLTDRKQY 156
Query: 463 PDVGVAKAVELATKASKWSQTYLGTPLSKLP 493
D+G ++ EL + W T + +P
Sbjct: 157 VDLGGVRSSELTMHNALWYSARKYTRSASIP 187
>SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.5 bits (73), Expect = 0.88
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P A K + +K KS KKP+P K + PK
Sbjct: 134 KAKKPAAKKPKAAKKPAAKTTPSKKAKSPKKPAPKKATKSPKKAAKKPVAKKPAVAKPKK 193
Query: 300 PVD-PAAKKSAQELAEK 315
+ PAAKK+A++ A+K
Sbjct: 194 ATNKPAAKKAAKKPAKK 210
>SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 179
Score = 33.5 bits (73), Expect = 0.88
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 244 KLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKMPVDP 303
K K PAA K K A+ K+ KKP+ KK ++ K K P
Sbjct: 109 KAAKKPAAKKSPKKAAAKKSPKKAAKKPAA-KKATKKPTAKKAAAKPAKKLAAKKAAKRP 167
Query: 304 AAKKSAQELAEK 315
AAKK+ ++ A+K
Sbjct: 168 AAKKAVKKPAKK 179
>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 33.5 bits (73), Expect = 0.88
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+L+CD C +HL CL PPL W
Sbjct: 196 LLMCDTCTLVYHLSCLDPPLTTIPTGMW 223
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 33.5 bits (73), Expect = 0.88
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P A K + +K KS KKP+P K + PK
Sbjct: 294 KAKKPAAKKPKAAKKPAAKTTPSKKAKSPKKPAPKKATKSPKKAAKKPVAKKPAVAKPKK 353
Query: 300 PVD-PAAKKSAQELAEK 315
+ PAAKK+A++ A+K
Sbjct: 354 ATNKPAAKKAAKKPAKK 370
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 33.1 bits (72), Expect = 1.2
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 226 VSFSQIFTGNPPEFESSKKLLKSPAAT-KVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
V S F N E KK K A K KPA+ K+ K SP K ++ + K
Sbjct: 81 VGASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKK 140
Query: 285 FLXXXXXXXXXXPKMPVDPAAKKSAQELAEK 315
K PA K +A++ A+K
Sbjct: 141 PAAKKATKKPAAKKAAAKPAKKPAAKKAAKK 171
Score = 31.9 bits (69), Expect = 2.7
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 244 KLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKMPVDP 303
K K PAA K K A+ K+ KKP+ K +++ K K P
Sbjct: 109 KAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKK-----PAAKKAAAKPAKKP 163
Query: 304 AAKKSAQELAEK 315
AAKK+A++ A K
Sbjct: 164 AAKKAAKKPAAK 175
Score = 31.9 bits (69), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
P+ + K K PAA K KPA+ K KKP+ K ++ + K
Sbjct: 129 PKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKKAAKKPAAKK 176
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 32.7 bits (71), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 241 SSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQ 279
++KK K PAA K KPA K+ KKP+ K ++
Sbjct: 192 AAKKAAKKPAAKKAAAKPAKKPAAKKAAKKPAAKKAAKK 230
Score = 31.9 bits (69), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
P+ + K K PAA K KPA+ K KKP+ K ++ + K
Sbjct: 179 PKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKAAKKPAAKK 226
Score = 31.5 bits (68), Expect = 3.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 241 SSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKMP 300
++KK K AA K P A K + KKP+ K ++ + K K
Sbjct: 162 AAKKSPKKAAAKKPSKSPKKAAK-KPAAKKPAAKKAAKKPAAKK-AAAKPAKKPAAKKAA 219
Query: 301 VDPAAKKSAQELAEK 315
PAAKK+A++ A+K
Sbjct: 220 KKPAAKKAAKKPAKK 234
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+LLCD C+ G+H+ CL P L W
Sbjct: 119 LLLCDNCDRGYHMSCLDPKLTKAPKGAW 146
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 32.7 bits (71), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 241 SSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQ 279
++KK K PAA K KPA K+ KKP+ K ++
Sbjct: 237 AAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKKAAKK 275
Score = 32.3 bits (70), Expect = 2.0
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 244 KLLKSPAATKVQHKPASATKLNKSLKKPSPDK----KGRQESMDKFLXXXXXXXXXXPKM 299
K K PAA K K A+ K+ KKP+ K K ++ K K
Sbjct: 204 KAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKA 263
Query: 300 PVDPAAKKSAQELAEK 315
PAAKK+A++ A+K
Sbjct: 264 TKKPAAKKAAKKPAKK 279
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K + K P A K KPA+ K+ K SP K ++ + K K
Sbjct: 194 KAKKPVAKKPKAAK---KPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKA 250
Query: 300 PVDPAAKKSAQELAEK 315
PA K +A++ +K
Sbjct: 251 AAKPAKKPAAKKATKK 266
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
P+ + K K PAA K KPA+ K KKP+ K ++ + K
Sbjct: 224 PKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKK 271
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKWQ 1004
D +L CD C +HL CL PP+ +W+
Sbjct: 457 DGGQLLCCDKCPMAYHLKCLIPPMMRVPTGEWK 489
>SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18)
Length = 134
Score = 32.7 bits (71), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 972 DPHAMLLCDACNAGHHLYCLTPPLQVQAVEKWQ 1004
D +L CD C +HL CL PP+ +W+
Sbjct: 19 DGGQLLCCDKCPMAYHLKCLIPPMMRVPTGEWK 51
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 32.7 bits (71), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 241 SSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQ 279
++KK K PAA K KPA K+ KKP+ K ++
Sbjct: 142 AAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKKAAKK 180
Score = 32.3 bits (70), Expect = 2.0
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 244 KLLKSPAATKVQHKPASATKLNKSLKKPSPDK----KGRQESMDKFLXXXXXXXXXXPKM 299
K K PAA K K A+ K+ KKP+ K K ++ K K
Sbjct: 109 KAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKA 168
Query: 300 PVDPAAKKSAQELAEK 315
PAAKK+A++ A+K
Sbjct: 169 TKKPAAKKAAKKPAKK 184
Score = 31.5 bits (68), Expect = 3.6
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 226 VSFSQIFTGNPPEFESSKKLLKSPAAT-KVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
V S F N E KK K A K KPA+ K+ K SP K ++ + K
Sbjct: 81 VGASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKK 140
Query: 285 FLXXXXXXXXXXPKMPVDPAAKKSAQELAEK 315
K PA K +A++ +K
Sbjct: 141 PAAKKAAKKPAAKKAAAKPAKKPAAKKATKK 171
Score = 31.1 bits (67), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
P+ + K K PAA K KPA+ K KKP+ K ++ + K
Sbjct: 129 PKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKK 176
>SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 32.3 bits (70), Expect = 2.0
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P A K A K KS KKP+P K + PK
Sbjct: 98 KAKKPAAKKPKAAKKPAAKKPAAKKAKSPKKPAPKKATKSPKKAAKKPAAKKPAAAKPKK 157
Query: 300 PV--DPAAKKSAQELAEK 315
PAAKK+A++ A K
Sbjct: 158 AAAKKPAAKKAAKKPAAK 175
>SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 32.3 bits (70), Expect = 2.0
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P A K A K KS KKP+P K + PK
Sbjct: 161 KAKKPAAKKPKAAKKPAAKKPAAKKAKSPKKPAPKKATKSPKKAAKKPAAKKPAAAKPKK 220
Query: 300 PV--DPAAKKSAQELAEK 315
PAAKK+A++ A K
Sbjct: 221 AAAKKPAAKKAAKKPAAK 238
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 31.9 bits (69), Expect = 2.7
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 226 VSFSQIFTGNPPEFESSKKLLKSPAAT-KVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
V S F N E KK K A K KPA+ K+ K SP K ++ + K
Sbjct: 81 VGASGSFKLNKAAVEKPKKAKKPVAKKPKAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKK 140
Query: 285 FLXXXXXXXXXXPKMPVDPAAKKSAQELAEK 315
K PA K +A++ A++
Sbjct: 141 PAAKKATKKPAAKKAAAKPAKKPAAKKAAKR 171
Score = 31.9 bits (69), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 237 PEFESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDK 284
P+ + K K PAA K KPA+ K KKP+ K ++ + K
Sbjct: 129 PKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKKAAKRPAAKK 176
Score = 31.5 bits (68), Expect = 3.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 244 KLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKMPVDP 303
K K PAA K K A+ K+ KKP+ K +++ K K P
Sbjct: 109 KAAKKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKK-----PAAKKAAAKPAKKP 163
Query: 304 AAKKSAQELAEK 315
AAKK+A+ A K
Sbjct: 164 AAKKAAKRPAAK 175
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 31.9 bits (69), Expect = 2.7
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 721 QQLLICS-GDLSTCKVHGKVDRPQWWVYHTEEQIEALIQSLNKRGIRESELRQSLELDKD 779
+QLL C+ G T K K ++ + E Q+E ++ + R E LEL+ D
Sbjct: 306 KQLLGCAIGIKVTPKKLRKYEKEYEAIKEKEAQLEDPVERFKRENKRLVEANMRLELEND 365
Query: 780 NIIQYLRKCPVKYLNGSAASDREAWR 805
+ L C V L+ A +E WR
Sbjct: 366 YLAHELVTCKVT-LHSKLAELKEMWR 390
>SB_57296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 649 PRGPCRDKPLPSAPEHGEDTLTYVTRLFETEKERASSDKENDSAANSRGNSPKKPLTNIN 708
P+ P + PS PE G+D + Y + + +E R + + N G SP T
Sbjct: 131 PKLPDMEAQFPSPPEAGDDNVFYDSDVPRSEHGRTNQGVP-ERCTNENGGSP----TTRY 185
Query: 709 GLTHRNGFDDITQQLL 724
++ NGF +QL+
Sbjct: 186 DVSPSNGFHQTAEQLV 201
>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 31.1 bits (67), Expect = 4.7
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 240 ESSKKLLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXXXXXPKM 299
++ K K P ATK + + KS KKP+P K + PK
Sbjct: 220 KAKKPAAKKPKATKKPAAKTTPSNKAKSPKKPAPKKATKSPKKAAKKPVAKKPAVAKPKK 279
Query: 300 PV-DPAAKKSAQELAEK 315
P AKK+A++ A+K
Sbjct: 280 ATKKPTAKKAAKKPAKK 296
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 31.1 bits (67), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 976 MLLCDACNAGHHLYCLTPPLQVQAVEKW 1003
+L C+ C +HL CL PPL+ W
Sbjct: 279 LLCCEICPGVYHLQCLKPPLEQVPTGDW 306
>SB_36172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 30.3 bits (65), Expect = 8.2
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 235 NPPEFESSKK-LLKSPAATKVQHKPASATKLNKSLKKPSPDKKGRQESMDKFLXXXXXXX 293
+PP +S K K P A K + +K KS KKP+ K +
Sbjct: 17 DPPGCRNSMKPAAKKPKAAKKPAAKTTPSKKAKSPKKPALKKATKSPKKAAKKPVAKKPA 76
Query: 294 XXXPKMPVD-PAAKKSAQELAEK 315
PK + PAAKK+A+ A+K
Sbjct: 77 VAKPKKAANKPAAKKAAKRPAKK 99
>SB_445| Best HMM Match : TPR_2 (HMM E-Value=5.8)
Length = 229
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 129 DHWTEAHILSVTAQKQHPDSKAILSA 154
+H T A +LS+ A+ HPDS A+ A
Sbjct: 140 NHMTSAFLLSILARSTHPDSAALADA 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,170,848
Number of Sequences: 59808
Number of extensions: 1226720
Number of successful extensions: 3683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3548
Number of HSP's gapped (non-prelim): 123
length of query: 1015
length of database: 16,821,457
effective HSP length: 89
effective length of query: 926
effective length of database: 11,498,545
effective search space: 10647652670
effective search space used: 10647652670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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